SOLTUB.AGRIA.G00000038522

Description : Syntaxin

Gene families : OG_02_0024648 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038522
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_12

Type	GO Term	Name	Evidence	Source
BP	GO:0000045	autophagosome assembly	IEA	AHRD
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0000149	SNARE binding	None	Extended
CC	GO:0000323	lytic vacuole	None	Extended
CC	GO:0000407	phagophore assembly site	IEA	AHRD
CC	GO:0001772	immunological synapse	IEA	AHRD
BP	GO:0001910	regulation of leukocyte mediated cytotoxicity	None	Extended
BP	GO:0001912	positive regulation of leukocyte mediated cytotoxicity	None	Extended
BP	GO:0001914	regulation of T cell mediated cytotoxicity	None	Extended
BP	GO:0001916	positive regulation of T cell mediated cytotoxicity	IEA	AHRD
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002684	positive regulation of immune system process	None	Extended
BP	GO:0002697	regulation of immune effector process	None	Extended
BP	GO:0002699	positive regulation of immune effector process	None	Extended
BP	GO:0002703	regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002705	positive regulation of leukocyte mediated immunity	None	Extended
BP	GO:0002706	regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002708	positive regulation of lymphocyte mediated immunity	None	Extended
BP	GO:0002709	regulation of T cell mediated immunity	None	Extended
BP	GO:0002711	positive regulation of T cell mediated immunity	None	Extended
BP	GO:0002819	regulation of adaptive immune response	None	Extended
BP	GO:0002821	positive regulation of adaptive immune response	None	Extended
BP	GO:0002822	regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
BP	GO:0002824	positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005484	SNAP receptor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005764	lysosome	None	Extended
CC	GO:0005765	lysosomal membrane	IEA	AHRD
CC	GO:0005766	primary lysosome	None	Extended
CC	GO:0005768	endosome	None	Extended
CC	GO:0005769	early endosome	IEA	AHRD
CC	GO:0005773	vacuole	None	Extended
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005798	Golgi-associated vesicle	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006869	lipid transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006887	exocytosis	None	Extended
BP	GO:0006892	post-Golgi vesicle-mediated transport	None	Extended
BP	GO:0006896	Golgi to vacuole transport	IEA	AHRD
BP	GO:0006906	vesicle fusion	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007030	Golgi organization	None	Extended
BP	GO:0007033	vacuole organization	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007041	lysosomal transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008333	endosome to lysosome transport	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	None	Extended
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009660	amyloplast organization	IEA	AHRD
CC	GO:0009705	plant-type vacuole membrane	IEA	AHRD
BP	GO:0009959	negative gravitropism	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0010008	endosome membrane	None	Extended
BP	GO:0010118	stomatal movement	IEA	AHRD
CC	GO:0012506	vesicle membrane	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015850	organic hydroxy compound transport	None	Extended
BP	GO:0015918	sterol transport	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016050	vesicle organization	None	Extended
BP	GO:0016079	synaptic vesicle exocytosis	IEA	AHRD
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
MF	GO:0016247	channel regulator activity	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
MF	GO:0017081	chloride channel regulator activity	None	Extended
MF	GO:0019869	chloride channel inhibitor activity	IEA	AHRD
MF	GO:0019905	syntaxin binding	IEA	AHRD
BP	GO:0022406	membrane docking	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023061	signal release	None	Extended
CC	GO:0030133	transport vesicle	None	Extended
CC	GO:0030135	coated vesicle	None	Extended
CC	GO:0030136	clathrin-coated vesicle	None	Extended
CC	GO:0030139	endocytic vesicle	None	Extended
CC	GO:0030140	trans-Golgi network transport vesicle	IEA	AHRD
CC	GO:0030141	secretory granule	None	Extended
CC	GO:0030285	integral component of synaptic vesicle membrane	IEA	AHRD
BP	GO:0030301	cholesterol transport	None	Extended
CC	GO:0030659	cytoplasmic vesicle membrane	None	Extended
CC	GO:0030666	endocytic vesicle membrane	IEA	AHRD
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
CC	GO:0031082	BLOC complex	None	Extended
CC	GO:0031083	BLOC-1 complex	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031201	SNARE complex	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031300	intrinsic component of organelle membrane	None	Extended
CC	GO:0031301	integral component of organelle membrane	None	Extended
BP	GO:0031341	regulation of cell killing	None	Extended
BP	GO:0031343	positive regulation of cell killing	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
BP	GO:0031647	regulation of protein stability	None	Extended
CC	GO:0031902	late endosome membrane	IEA	AHRD
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0031985	Golgi cisterna	IEA	AHRD
CC	GO:0032588	trans-Golgi network membrane	IEA	AHRD
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0032940	secretion by cell	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033344	cholesterol efflux	IEA	AHRD
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	AHRD
CC	GO:0042582	azurophil granule	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
BP	GO:0045055	regulated exocytosis	None	Extended
CC	GO:0045121	membrane raft	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0045324	late endosome to vacuole transport	IEA	AHRD
CC	GO:0045335	phagocytic vesicle	IEA	AHRD
BP	GO:0046903	secretion	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048278	vesicle docking	IEA	AHRD
BP	GO:0048284	organelle fusion	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0050776	regulation of immune response	None	Extended
BP	GO:0050778	positive regulation of immune response	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050821	protein stabilization	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
CC	GO:0055037	recycling endosome	IEA	AHRD
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0061025	membrane fusion	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
BP	GO:0090161	Golgi ribbon formation	IEA	AHRD
BP	GO:0090174	organelle membrane fusion	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098563	intrinsic component of synaptic vesicle membrane	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098852	lytic vacuole membrane	None	Extended
CC	GO:0098857	membrane microdomain	None	Extended
BP	GO:0099003	vesicle-mediated transport in synapse	None	Extended
MF	GO:0099106	ion channel regulator activity	None	Extended
CC	GO:0099503	secretory vesicle	None	Extended
BP	GO:0099643	signal release from synapse	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140056	organelle localization by membrane tethering	None	Extended
BP	GO:0140352	export from cell	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1902683	regulation of receptor localization to synapse	None	Extended
BP	GO:1902685	positive regulation of receptor localization to synapse	IEA	AHRD
BP	GO:1903076	regulation of protein localization to plasma membrane	IEA	AHRD
BP	GO:1904375	regulation of protein localization to cell periphery	None	Extended
BP	GO:1905037	autophagosome organization	None	Extended
BP	GO:1905475	regulation of protein localization to membrane	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000018	regulation of DNA recombination	IEP	Predict GO terms from Neighborhoods
MF	GO:0003725	double-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0006282	regulation of DNA repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006325	chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006338	chromatin remodeling	IEP	Predict GO terms from Neighborhoods
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010569	regulation of double-strand break repair via homologous recombination	IEP	Predict GO terms from Neighborhoods
BP	GO:0031047	gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0031048	small non-coding RNA-dependent heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031507	heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040029	epigenetic regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	Predict GO terms from Neighborhoods
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0070828	heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080135	regulation of cellular response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0080188	gene silencing by RNA-directed DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0140718	facultative heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000779	regulation of double-strand break repair	IEP	Predict GO terms from Neighborhoods
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000727	T_SNARE_dom	88	124

External Links

No external refs found!

SOLTUB.AGRIA.G00000038522

Expression Profile

Co-expression Networks

Functional Annotation