SOLTUB.AGRIA.G00000038614

Description : Methyl-CpG-binding domain-containing protein 11

Gene families : OG_02_0007067 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038614
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
MF	GO:0008327	methyl-CpG binding	IEA	AHRD
MF	GO:0036094	small molecule binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000350	generation of catalytic spliceosome for second transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000389	mRNA 3'-splice site recognition	IEP	Predict GO terms from Neighborhoods
CC	GO:0000974	Prp19 complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0002178	palmitoyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005684	U2-type spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005798	Golgi-associated vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0006376	mRNA splice site selection	IEP	Predict GO terms from Neighborhoods
BP	GO:0006497	protein lipidation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0007263	nitric oxide mediated signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016417	S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018198	peptidyl-cysteine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018230	peptidyl-L-cysteine S-palmitoylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018231	peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine	IEP	Predict GO terms from Neighborhoods
BP	GO:0018345	protein palmitoylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0019706	protein-cysteine S-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019707	protein-cysteine S-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0030135	coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030136	clathrin-coated vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030140	trans-Golgi network transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0035618	root hair	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0043849	Ras palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060966	regulation of gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0070920	regulation of production of small RNA involved in gene silencing by RNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0071006	U2-type catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071008	U2-type post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071012	catalytic step 1 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071013	catalytic step 2 spliceosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0071014	post-mRNA release spliceosomal complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071020	post-spliceosomal complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900425	negative regulation of defense response to bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:1903798	regulation of miRNA maturation	IEP	Predict GO terms from Neighborhoods
MF	GO:1990841	promoter-specific chromatin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000634	regulation of primary miRNA processing	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR016177	DNA-bd_dom_sf	13	106
IPR001739	Methyl_CpG_DNA-bd	16	77

External Links

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SOLTUB.AGRIA.G00000038614

Expression Profile

Co-expression Networks

Functional Annotation