SOLTUB.AGRIA.G00000038655

Description : RING/U-box superfamily protein

Gene families : OG_02_0011337 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000038655
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_123

Type	GO Term	Name	Evidence	Source
BP	GO:0002643	regulation of tolerance induction	IEA	AHRD
BP	GO:0002682	regulation of immune system process	None	Extended
BP	GO:0002683	negative regulation of immune system process	None	Extended
BP	GO:0002694	regulation of leukocyte activation	None	Extended
BP	GO:0002695	negative regulation of leukocyte activation	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006513	protein monoubiquitination	IEA	AHRD
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007162	negative regulation of cell adhesion	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
BP	GO:0008285	negative regulation of cell population proliferation	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	AHRD
MF	GO:0016740	transferase activity	IEA	AHRD
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	IEA	AHRD
BP	GO:0022407	regulation of cell-cell adhesion	None	Extended
BP	GO:0022408	negative regulation of cell-cell adhesion	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030155	regulation of cell adhesion	None	Extended
BP	GO:0030162	regulation of proteolysis	None	Extended
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031397	negative regulation of protein ubiquitination	None	Extended
BP	GO:0031398	positive regulation of protein ubiquitination	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031400	negative regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
MF	GO:0031624	ubiquitin conjugating enzyme binding	IEA	AHRD
BP	GO:0031647	regulation of protein stability	None	Extended
MF	GO:0032182	ubiquitin-like protein binding	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032944	regulation of mononuclear cell proliferation	None	Extended
BP	GO:0032945	negative regulation of mononuclear cell proliferation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042129	regulation of T cell proliferation	None	Extended
BP	GO:0042130	negative regulation of T cell proliferation	IEA	AHRD
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042177	negative regulation of protein catabolic process	None	Extended
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
MF	GO:0043130	ubiquitin binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043516	regulation of DNA damage response, signal transduction by p53 class mediator	None	Extended
BP	GO:0043518	negative regulation of DNA damage response, signal transduction by p53 class mediator	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044390	ubiquitin-like protein conjugating enzyme binding	None	Extended
BP	GO:0045861	negative regulation of proteolysis	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050670	regulation of lymphocyte proliferation	None	Extended
BP	GO:0050672	negative regulation of lymphocyte proliferation	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050821	protein stabilization	IEA	AHRD
BP	GO:0050863	regulation of T cell activation	None	Extended
BP	GO:0050865	regulation of cell activation	None	Extended
BP	GO:0050866	negative regulation of cell activation	None	Extended
BP	GO:0050868	negative regulation of T cell activation	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051249	regulation of lymphocyte activation	None	Extended
BP	GO:0051250	negative regulation of lymphocyte activation	None	Extended
BP	GO:0051865	protein autoubiquitination	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0061136	regulation of proteasomal protein catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0070663	regulation of leukocyte proliferation	None	Extended
BP	GO:0070664	negative regulation of leukocyte proliferation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
MF	GO:0097371	MDM2/MDM4 family protein binding	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901796	regulation of signal transduction by p53 class mediator	None	Extended
BP	GO:1901797	negative regulation of signal transduction by p53 class mediator	None	Extended
BP	GO:1901799	negative regulation of proteasomal protein catabolic process	IEA	AHRD
BP	GO:1902165	regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	None	Extended
BP	GO:1902166	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator	IEA	AHRD
BP	GO:1902229	regulation of intrinsic apoptotic signaling pathway in response to DNA damage	None	Extended
BP	GO:1902230	negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage	None	Extended
BP	GO:1902253	regulation of intrinsic apoptotic signaling pathway by p53 class mediator	None	Extended
BP	GO:1902254	negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator	None	Extended
BP	GO:1902498	regulation of protein autoubiquitination	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902532	negative regulation of intracellular signal transduction	None	Extended
BP	GO:1902914	regulation of protein polyubiquitination	None	Extended
BP	GO:1902916	positive regulation of protein polyubiquitination	IEA	AHRD
BP	GO:1903037	regulation of leukocyte cell-cell adhesion	None	Extended
BP	GO:1903038	negative regulation of leukocyte cell-cell adhesion	None	Extended
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903321	negative regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1905524	negative regulation of protein autoubiquitination	IEA	AHRD
BP	GO:2001020	regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001021	negative regulation of response to DNA damage stimulus	None	Extended
BP	GO:2001233	regulation of apoptotic signaling pathway	None	Extended
BP	GO:2001234	negative regulation of apoptotic signaling pathway	None	Extended
BP	GO:2001242	regulation of intrinsic apoptotic signaling pathway	None	Extended
BP	GO:2001243	negative regulation of intrinsic apoptotic signaling pathway	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001523	retinoid metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0001750	photoreceptor outer segment	IEP	Predict GO terms from Neighborhoods
CC	GO:0001917	photoreceptor inner segment	IEP	Predict GO terms from Neighborhoods
BP	GO:0003333	amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0004033	aldo-keto reductase (NADP) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005774	vacuolar membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005938	cell cortex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006820	anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006865	amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006868	glutamine transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008106	alcohol dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009528	plastid inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009609	response to symbiotic bacterium	IEP	Predict GO terms from Neighborhoods
BP	GO:0009610	response to symbiotic fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009653	anatomical structure morphogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009705	plant-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009706	chloroplast inner membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009791	post-embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009826	unidimensional cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0009832	plant-type cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0009897	external side of plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009914	hormone transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0010101	post-embryonic root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010102	lateral root morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010103	stomatal complex morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010191	mucilage metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010315	auxin export across the plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010817	regulation of hormone levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015175	neutral amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015179	L-amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015186	L-glutamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015562	efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015800	acidic amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015804	neutral amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015807	L-amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015813	L-glutamate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015849	organic acid transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016049	cell growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0017022	myosin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030133	transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0031012	extracellular matrix	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031224	intrinsic component of membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0032029	myosin tail binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032036	myosin heavy chain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032350	regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032502	developmental process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032973	amino acid export across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033240	positive regulation of cellular amine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0034639	L-amino acid efflux transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0036377	arbuscular mycorrhizal association	IEP	Predict GO terms from Neighborhoods
BP	GO:0040007	growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0042546	cell wall biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042592	homeostatic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045764	positive regulation of cellular amino acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046942	carboxylic acid transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048316	seed development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048589	developmental growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0048608	reproductive structure development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048878	chemical homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051938	L-glutamate import	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060918	auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071554	cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080001	mucilage extrusion from seed coat	IEP	Predict GO terms from Neighborhoods
MF	GO:0080115	myosin XI tail binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0080144	amino acid homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0089718	amino acid import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090354	regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090355	positive regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090357	regulation of tryptophan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090358	positive regulation of tryptophan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090626	plant epidermis morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0097190	apoptotic signaling pathway	IEP	Predict GO terms from Neighborhoods
CC	GO:0098552	side of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098588	bounding membrane of organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0098712	L-glutamate import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098739	import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0140115	export across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0140352	export from cell	IEP	Predict GO terms from Neighborhoods
BP	GO:1902475	L-alpha-amino acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903825	organic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR011016	Znf_RING-CH	274	321

External Links

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SOLTUB.AGRIA.G00000038655

Expression Profile

Co-expression Networks

Functional Annotation