Coexpression cluster: Cluster_123 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0018933 nicotine metabolic process 7.02% (4/57) 8.61 0.0 0.0
GO:0030750 putrescine N-methyltransferase activity 7.02% (4/57) 8.61 0.0 0.0
GO:0042179 nicotine biosynthetic process 7.02% (4/57) 8.61 0.0 0.0
GO:0004766 spermidine synthase activity 7.02% (4/57) 7.84 0.0 0.0
GO:0009446 putrescine biosynthetic process 7.02% (4/57) 7.51 0.0 1e-06
GO:0008295 spermidine biosynthetic process 7.02% (4/57) 7.1 0.0 3e-06
GO:0009445 putrescine metabolic process 7.02% (4/57) 7.1 0.0 3e-06
GO:0006596 polyamine biosynthetic process 7.02% (4/57) 6.78 0.0 6e-06
GO:0008216 spermidine metabolic process 7.02% (4/57) 5.93 1e-06 6.1e-05
GO:0006595 polyamine metabolic process 7.02% (4/57) 5.49 2e-06 0.000172
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 12.28% (7/57) 3.58 2e-06 0.000184
GO:0009309 amine biosynthetic process 7.02% (4/57) 4.81 1.3e-05 0.00097
GO:0042401 cellular biogenic amine biosynthetic process 7.02% (4/57) 4.81 1.3e-05 0.00097
GO:0019748 secondary metabolic process 21.05% (12/57) 2.11 1.5e-05 0.001052
GO:1901566 organonitrogen compound biosynthetic process 22.81% (13/57) 1.98 1.7e-05 0.001102
GO:0044550 secondary metabolite biosynthetic process 17.54% (10/57) 2.27 3.6e-05 0.002115
GO:0009308 amine metabolic process 10.53% (6/57) 3.1 7.1e-05 0.003976
GO:0009821 alkaloid biosynthetic process 8.77% (5/57) 3.32 0.000146 0.007698
GO:1902916 positive regulation of protein polyubiquitination 3.51% (2/57) 6.51 0.000217 0.010858
GO:0006576 cellular biogenic amine metabolic process 7.02% (4/57) 3.73 0.000242 0.011531
GO:0044106 cellular amine metabolic process 7.02% (4/57) 3.67 0.000285 0.012323
GO:0047084 methyltetrahydroprotoberberine 14-monooxygenase activity 3.51% (2/57) 6.33 0.00028 0.012701
GO:1902914 regulation of protein polyubiquitination 3.51% (2/57) 6.25 0.000315 0.013034
GO:0016491 oxidoreductase activity 21.05% (12/57) 1.65 0.000329 0.013059
GO:0047087 protopine 6-monooxygenase activity 3.51% (2/57) 6.17 0.000352 0.013389
GO:1901564 organonitrogen compound metabolic process 42.11% (24/57) 0.95 0.000452 0.016548
GO:0097007 4,8,12-trimethyltrideca-1,3,7,11-tetraene synthase activity 3.51% (2/57) 5.84 0.000565 0.017925
GO:0097008 (3E)-4,8-dimethyl-1,3,7-nonatriene synthase activity 3.51% (2/57) 5.84 0.000565 0.017925
GO:1901045 negative regulation of oviposition 3.51% (2/57) 5.84 0.000565 0.017925
GO:0046246 terpene biosynthetic process 8.77% (5/57) 2.9 0.000548 0.019329
GO:0042214 terpene metabolic process 8.77% (5/57) 2.79 0.000777 0.021766
GO:0106149 indole-3-carbonyl nitrile 4-hydroxylase activity 3.51% (2/57) 5.67 0.000716 0.021998
GO:0048521 negative regulation of behavior 3.51% (2/57) 5.61 0.000771 0.022234
GO:0009058 biosynthetic process 33.33% (19/57) 1.09 0.000758 0.022565
GO:0106144 fraxetin 5-hydroxylase activity 3.51% (2/57) 5.51 0.000885 0.023411
GO:0106146 sideretin biosynthesis 3.51% (2/57) 5.51 0.000885 0.023411
GO:0031624 ubiquitin conjugating enzyme binding 3.51% (2/57) 5.33 0.001137 0.027765
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex 3.51% (2/57) 5.33 0.001137 0.027765
GO:1901576 organic substance biosynthetic process 31.58% (18/57) 1.09 0.001116 0.028708
GO:0015079 potassium ion transmembrane transporter activity 5.26% (3/57) 3.84 0.001239 0.029477
GO:0046662 regulation of oviposition 3.51% (2/57) 5.21 0.001347 0.031266
GO:0018973 trinitrotoluene metabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0018974 2,4,6-trinitrotoluene metabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0019326 nitrotoluene metabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0046256 2,4,6-trinitrotoluene catabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0046260 trinitrotoluene catabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0046263 nitrotoluene catabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0072490 toluene-containing compound metabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0072491 toluene-containing compound catabolic process 3.51% (2/57) 5.03 0.001733 0.031721
GO:0009820 alkaloid metabolic process 8.77% (5/57) 2.51 0.001818 0.032659
GO:0050634 phloroisovalerophenone synthase activity 1.75% (1/57) 9.42 0.001458 0.033054
GO:0044249 cellular biosynthetic process 29.82% (17/57) 1.09 0.001575 0.03488
GO:0071281 cellular response to iron ion 3.51% (2/57) 5.06 0.001652 0.035737
GO:0044390 ubiquitin-like protein conjugating enzyme binding 3.51% (2/57) 4.64 0.002952 0.036502
GO:0002643 regulation of tolerance induction 1.75% (1/57) 8.42 0.002914 0.036507
GO:0032945 negative regulation of mononuclear cell proliferation 1.75% (1/57) 8.42 0.002914 0.036507
GO:0042130 negative regulation of T cell proliferation 1.75% (1/57) 8.42 0.002914 0.036507
GO:0050672 negative regulation of lymphocyte proliferation 1.75% (1/57) 8.42 0.002914 0.036507
GO:0070664 negative regulation of leukocyte proliferation 1.75% (1/57) 8.42 0.002914 0.036507
GO:0006837 serotonin transport 1.75% (1/57) 8.42 0.002914 0.036507
GO:0035631 CD40 receptor complex 1.75% (1/57) 8.42 0.002914 0.036507
GO:0045035 sensory organ precursor cell division 1.75% (1/57) 8.42 0.002914 0.036507
GO:0046668 regulation of retinal cell programmed cell death 1.75% (1/57) 8.42 0.002914 0.036507
GO:0046669 regulation of compound eye retinal cell programmed cell death 1.75% (1/57) 8.42 0.002914 0.036507
GO:0046671 negative regulation of retinal cell programmed cell death 1.75% (1/57) 8.42 0.002914 0.036507
GO:0046673 negative regulation of compound eye retinal cell programmed cell death 1.75% (1/57) 8.42 0.002914 0.036507
GO:1900117 regulation of execution phase of apoptosis 1.75% (1/57) 8.42 0.002914 0.036507
GO:1900118 negative regulation of execution phase of apoptosis 1.75% (1/57) 8.42 0.002914 0.036507
GO:1902442 regulation of ripoptosome assembly involved in necroptotic process 1.75% (1/57) 8.42 0.002914 0.036507
GO:1902443 negative regulation of ripoptosome assembly involved in necroptotic process 1.75% (1/57) 8.42 0.002914 0.036507
GO:1990001 inhibition of cysteine-type endopeptidase activity involved in apoptotic process 1.75% (1/57) 8.42 0.002914 0.036507
GO:2001271 negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis 1.75% (1/57) 8.42 0.002914 0.036507
GO:0070887 cellular response to chemical stimulus 19.3% (11/57) 1.36 0.003117 0.03756
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen 10.53% (6/57) 2.06 0.003081 0.03761
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity 7.02% (4/57) 2.88 0.002143 0.037778
GO:0120252 hydrocarbon metabolic process 8.77% (5/57) 2.32 0.003238 0.038537
GO:0006814 sodium ion transport 3.51% (2/57) 4.84 0.002257 0.039072
GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen 8.77% (5/57) 2.43 0.002357 0.040066
GO:0120251 hydrocarbon biosynthetic process 8.77% (5/57) 2.41 0.002487 0.040822
GO:0008299 isoprenoid biosynthetic process 10.53% (6/57) 2.12 0.002485 0.041507
GO:0050356 tropine dehydrogenase activity 1.75% (1/57) 7.84 0.004368 0.043321
GO:0050358 tropinone reductase activity 1.75% (1/57) 7.84 0.004368 0.043321
GO:0036360 sorocarp stalk morphogenesis 1.75% (1/57) 7.84 0.004368 0.043321
GO:1905524 negative regulation of protein autoubiquitination 1.75% (1/57) 7.84 0.004368 0.043321
GO:0051608 histamine transport 1.75% (1/57) 7.84 0.004368 0.043321
GO:1902603 carnitine transmembrane transport 1.75% (1/57) 7.84 0.004368 0.043321
GO:0060546 negative regulation of necroptotic process 1.75% (1/57) 7.84 0.004368 0.043321
GO:0060547 negative regulation of necrotic cell death 1.75% (1/57) 7.84 0.004368 0.043321
GO:0062099 negative regulation of programmed necrotic cell death 1.75% (1/57) 7.84 0.004368 0.043321
GO:0097340 inhibition of cysteine-type endopeptidase activity 1.75% (1/57) 7.84 0.004368 0.043321
GO:0097341 zymogen inhibition 1.75% (1/57) 7.84 0.004368 0.043321
GO:0009635 response to herbicide 3.51% (2/57) 4.33 0.004474 0.043465
GO:0006575 cellular modified amino acid metabolic process 5.26% (3/57) 3.19 0.004435 0.043525
GO:0050795 regulation of behavior 3.51% (2/57) 4.27 0.004867 0.046336
GO:0071462 cellular response to water stimulus 5.26% (3/57) 3.14 0.004827 0.046417
GO:0102934 costunolide synthase activity 3.51% (2/57) 4.38 0.004221 0.048414
GO:0009404 toxin metabolic process 5.26% (3/57) 3.21 0.004273 0.048426
GO:0042631 cellular response to water deprivation 5.26% (3/57) 3.2 0.004326 0.048456
GO:0051761 sesquiterpene metabolic process 5.26% (3/57) 3.21 0.00422 0.04899
GO:0051762 sesquiterpene biosynthetic process 5.26% (3/57) 3.21 0.00422 0.04899
GO:0004497 monooxygenase activity 8.77% (5/57) 2.15 0.00527 0.049671
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_133 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_146 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_153 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_163 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_170 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_189 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_191 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_210 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_211 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_240 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_241 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_1 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_17 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_30 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_64 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_79 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_103 0.01 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_116 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_121 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (57) (download table)

InterPro Domains

GO Terms

Family Terms