SOLTUB.AGRIA.G00000039004

Description : NOT2 / NOT3 / NOT5 family isoform 2

Gene families : OG_02_0023588 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039004
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_26

Type	GO Term	Name	Evidence	Source
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEA	AHRD
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0015074	DNA integration	IEA	AHRD
CC	GO:0016020	membrane	IEA	AHRD
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016301	kinase activity	IEA	AHRD
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
CC	GO:0030015	CCR4-NOT core complex	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031347	regulation of defense response	IEA	AHRD
BP	GO:0032501	multicellular organismal process	IEA	AHRD
BP	GO:0032502	developmental process	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	IEA	AHRD
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006979	response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0008285	negative regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	IEP	Predict GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048235	pollen sperm cell differentiation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024788	Malectin-like_Carb-bd_dom	26	201
IPR007282	NOT2/3/5_C	1011	1150
IPR001611	Leu-rich_rpt	302	346

External Links

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SOLTUB.AGRIA.G00000039004

Expression Profile

Co-expression Networks

Functional Annotation