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  5. SOLTUB.AGRIA.G00000039102

SOLTUB.AGRIA.G00000039102


Description : RNA-binding S4 domain-containing protein


Gene families : OG_02_0005171 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039102
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0002097 tRNA wobble base modification IEP Predict GO terms from Neighborhoods
BP GO:0002098 tRNA wobble uridine modification IEP Predict GO terms from Neighborhoods
BP GO:0003407 neural retina development IEP Predict GO terms from Neighborhoods
MF GO:0003724 RNA helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0004386 helicase activity IEP Predict GO terms from Neighborhoods
MF GO:0005216 ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005231 excitatory extracellular ligand-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005234 extracellularly glutamate-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005253 anion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005254 chloride channel activity IEP Predict GO terms from Neighborhoods
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005436 sodium:phosphate symporter activity IEP Predict GO terms from Neighborhoods
BP GO:0006352 DNA-templated transcription initiation IEP Predict GO terms from Neighborhoods
BP GO:0006399 tRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006400 tRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0006814 sodium ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006817 phosphate ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006835 dicarboxylic acid transport IEP Predict GO terms from Neighborhoods
BP GO:0006836 neurotransmitter transport IEP Predict GO terms from Neighborhoods
BP GO:0006865 amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0007267 cell-cell signaling IEP Predict GO terms from Neighborhoods
BP GO:0007268 chemical synaptic transmission IEP Predict GO terms from Neighborhoods
BP GO:0007420 brain development IEP Predict GO terms from Neighborhoods
BP GO:0007611 learning or memory IEP Predict GO terms from Neighborhoods
BP GO:0007613 memory IEP Predict GO terms from Neighborhoods
BP GO:0007616 long-term memory IEP Predict GO terms from Neighborhoods
MF GO:0008068 extracellularly glutamate-gated chloride channel activity IEP Predict GO terms from Neighborhoods
MF GO:0008186 ATP-dependent activity, acting on RNA IEP Predict GO terms from Neighborhoods
BP GO:0008643 carbohydrate transport IEP Predict GO terms from Neighborhoods
BP GO:0009410 response to xenobiotic stimulus IEP Predict GO terms from Neighborhoods
CC GO:0009528 plastid inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0009663 plasmodesma organization IEP Predict GO terms from Neighborhoods
CC GO:0009706 chloroplast inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0010028 xanthophyll cycle IEP Predict GO terms from Neighborhoods
BP GO:0010496 intercellular transport IEP Predict GO terms from Neighborhoods
BP GO:0010497 plasmodesmata-mediated intercellular transport IEP Predict GO terms from Neighborhoods
MF GO:0015081 sodium ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015108 chloride transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015145 monosaccharide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015229 L-ascorbic acid transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015276 ligand-gated ion channel activity IEP Predict GO terms from Neighborhoods
MF GO:0015293 symporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015294 solute:cation symporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015370 solute:sodium symporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015749 monosaccharide transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0015800 acidic amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015807 L-amino acid transport IEP Predict GO terms from Neighborhoods
BP GO:0015882 L-ascorbic acid transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0016108 tetraterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016116 carotenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016122 xanthophyll metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016987 sigma factor activity IEP Predict GO terms from Neighborhoods
MF GO:0022834 ligand-gated channel activity IEP Predict GO terms from Neighborhoods
MF GO:0022836 gated channel activity IEP Predict GO terms from Neighborhoods
BP GO:0023052 signaling IEP Predict GO terms from Neighborhoods
BP GO:0030100 regulation of endocytosis IEP Predict GO terms from Neighborhoods
CC GO:0030285 integral component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030424 axon IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0034219 carbohydrate transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034330 cell junction organization IEP Predict GO terms from Neighborhoods
BP GO:0034660 ncRNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035249 synaptic transmission, glutamatergic IEP Predict GO terms from Neighborhoods
BP GO:0035461 vitamin transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0042137 sequestering of neurotransmitter IEP Predict GO terms from Neighborhoods
BP GO:0042391 regulation of membrane potential IEP Predict GO terms from Neighborhoods
MF GO:0043175 RNA polymerase core enzyme binding IEP Predict GO terms from Neighborhoods
CC GO:0044300 cerebellar mossy fiber IEP Predict GO terms from Neighborhoods
BP GO:0045216 cell-cell junction organization IEP Predict GO terms from Neighborhoods
CC GO:0048786 presynaptic active zone IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0050890 cognition IEP Predict GO terms from Neighborhoods
MF GO:0051119 sugar transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0051180 vitamin transport IEP Predict GO terms from Neighborhoods
BP GO:0051235 maintenance of location IEP Predict GO terms from Neighborhoods
BP GO:0051938 L-glutamate import IEP Predict GO terms from Neighborhoods
CC GO:0060076 excitatory synapse IEP Predict GO terms from Neighborhoods
BP GO:0060078 regulation of postsynaptic membrane potential IEP Predict GO terms from Neighborhoods
BP GO:0060079 excitatory postsynaptic potential IEP Predict GO terms from Neighborhoods
BP GO:0060249 anatomical structure homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0070050 neuron cellular homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0070063 RNA polymerase binding IEP Predict GO terms from Neighborhoods
BP GO:0071483 cellular response to blue light IEP Predict GO terms from Neighborhoods
BP GO:0090351 seedling development IEP Predict GO terms from Neighborhoods
MF GO:0090482 vitamin transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0097401 synaptic vesicle lumen acidification IEP Predict GO terms from Neighborhoods
CC GO:0098563 intrinsic component of synaptic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0098700 neurotransmitter loading into synaptic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0098916 anterograde trans-synaptic signaling IEP Predict GO terms from Neighborhoods
MF GO:0099095 ligand-gated anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0099536 synaptic signaling IEP Predict GO terms from Neighborhoods
BP GO:0099537 trans-synaptic signaling IEP Predict GO terms from Neighborhoods
BP GO:1900242 regulation of synaptic vesicle endocytosis IEP Predict GO terms from Neighborhoods
BP GO:1902600 proton transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903421 regulation of synaptic vesicle recycling IEP Predict GO terms from Neighborhoods
BP GO:1903825 organic acid transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1905039 carboxylic acid transmembrane transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 253 298
IPR040591 YlmH_RBD 157 232
No external refs found!