SOLTUB.AGRIA.G00000039150

Description : Histone H2B

Gene families : OG_02_0000337 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039150
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_181

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005730	nucleolus	IEA	AHRD
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	AHRD
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009534	chloroplast thylakoid	IEA	AHRD
CC	GO:0009570	chloroplast stroma	IEA	AHRD
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0046982	protein heterodimerization activity	IEA	AHRD
MF	GO:0046983	protein dimerization activity	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002182	cytoplasmic translational elongation	IEP	Predict GO terms from Neighborhoods
CC	GO:0005700	polytene chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006352	DNA-templated transcription initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006414	translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0010369	chromocenter	IEP	Predict GO terms from Neighborhoods
MF	GO:0031491	nucleosome binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031492	nucleosomal DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032774	RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035059	RCAF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051591	response to cAMP	IEP	Predict GO terms from Neighborhoods
BP	GO:0071320	cellular response to cAMP	IEP	Predict GO terms from Neighborhoods
BP	GO:1904400	response to Thyroid stimulating hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904401	cellular response to Thyroid stimulating hormone	IEP	Predict GO terms from Neighborhoods
BP	GO:1904587	response to glycoprotein	IEP	Predict GO terms from Neighborhoods
BP	GO:1904588	cellular response to glycoprotein	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR009072	Histone-fold	30	144
IPR007125	Histone_H2A/H2B/H3	5	120

External Links

No external refs found!

SOLTUB.AGRIA.G00000039150

Expression Profile

Co-expression Networks

Functional Annotation