Coexpression cluster: Cluster_181 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0000786 nucleosome 43.4% (23/53) 7.98 0.0 0.0
GO:0044815 DNA packaging complex 43.4% (23/53) 7.51 0.0 0.0
GO:0032993 protein-DNA complex 43.4% (23/53) 6.67 0.0 0.0
GO:0046982 protein heterodimerization activity 41.51% (22/53) 5.7 0.0 0.0
GO:0006334 nucleosome assembly 30.19% (16/53) 7.19 0.0 0.0
GO:0065004 protein-DNA complex assembly 32.08% (17/53) 6.59 0.0 0.0
GO:0034728 nucleosome organization 30.19% (16/53) 6.48 0.0 0.0
GO:0071824 protein-DNA complex subunit organization 32.08% (17/53) 6.0 0.0 0.0
GO:0006338 chromatin remodeling 33.96% (18/53) 5.27 0.0 0.0
GO:0006325 chromatin organization 33.96% (18/53) 4.9 0.0 0.0
GO:0046983 protein dimerization activity 45.28% (24/53) 3.49 0.0 0.0
GO:0009579 thylakoid 26.42% (14/53) 5.15 0.0 0.0
GO:0005730 nucleolus 39.62% (21/53) 3.51 0.0 0.0
GO:0065003 protein-containing complex assembly 37.74% (20/53) 3.44 0.0 0.0
GO:0003677 DNA binding 50.94% (27/53) 2.59 0.0 0.0
GO:0043933 protein-containing complex organization 37.74% (20/53) 3.24 0.0 0.0
GO:0032991 protein-containing complex 54.72% (29/53) 2.15 0.0 0.0
GO:0043228 non-membrane-bounded organelle 47.17% (25/53) 2.42 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 47.17% (25/53) 2.42 0.0 0.0
GO:0005622 intracellular anatomical structure 26.42% (14/53) 3.89 0.0 0.0
GO:0006352 DNA-templated transcription initiation 15.09% (8/53) 6.05 0.0 0.0
GO:0022607 cellular component assembly 39.62% (21/53) 2.64 0.0 0.0
GO:0003676 nucleic acid binding 54.72% (29/53) 1.91 0.0 0.0
GO:0016043 cellular component organization 52.83% (28/53) 1.69 0.0 0.0
GO:0032774 RNA biosynthetic process 16.98% (9/53) 4.16 0.0 0.0
GO:0071840 cellular component organization or biogenesis 52.83% (28/53) 1.6 0.0 0.0
GO:0034654 nucleobase-containing compound biosynthetic process 20.75% (11/53) 3.34 0.0 0.0
GO:0009534 chloroplast thylakoid 11.32% (6/53) 4.91 0.0 2e-06
GO:0031976 plastid thylakoid 11.32% (6/53) 4.89 0.0 2e-06
GO:0090304 nucleic acid metabolic process 32.08% (17/53) 1.96 1e-06 2e-05
GO:1901363 heterocyclic compound binding 56.6% (30/53) 1.19 1e-06 2.2e-05
GO:0009059 macromolecule biosynthetic process 22.64% (12/53) 2.53 1e-06 2.2e-05
GO:0097159 organic cyclic compound binding 56.6% (30/53) 1.18 1e-06 2.5e-05
GO:0043226 organelle 71.7% (38/53) 0.84 3e-06 9.1e-05
GO:0005515 protein binding 67.92% (36/53) 0.84 9e-06 0.000224
GO:0010369 chromocenter 5.66% (3/53) 6.25 8e-06 0.000225
GO:0044271 cellular nitrogen compound biosynthetic process 22.64% (12/53) 2.19 9e-06 0.000227
GO:0006139 nucleobase-containing compound metabolic process 32.08% (17/53) 1.67 1e-05 0.000256
GO:0005488 binding 79.25% (42/53) 0.66 1.2e-05 0.000278
GO:0018130 heterocycle biosynthetic process 20.75% (11/53) 2.19 2.1e-05 0.000495
GO:0043229 intracellular organelle 67.92% (36/53) 0.77 3.5e-05 0.000798
GO:0060091 kinocilium 3.77% (2/53) 7.72 3.8e-05 0.000822
GO:0097732 9+2 non-motile cilium 3.77% (2/53) 7.72 3.8e-05 0.000822
GO:0042491 inner ear auditory receptor cell differentiation 3.77% (2/53) 7.53 5e-05 0.00107
GO:0060118 vestibular receptor cell development 3.77% (2/53) 7.36 6.5e-05 0.001344
GO:0009507 chloroplast 18.87% (10/53) 2.13 7.8e-05 0.001596
GO:0060113 inner ear receptor cell differentiation 3.77% (2/53) 7.2 8.1e-05 0.001607
GO:0060119 inner ear receptor cell development 3.77% (2/53) 6.83 0.000139 0.00272
GO:0032420 stereocilium 3.77% (2/53) 6.72 0.000162 0.003106
GO:0060122 inner ear receptor cell stereocilium organization 3.77% (2/53) 6.62 0.000187 0.00351
GO:0019438 aromatic compound biosynthetic process 20.75% (11/53) 1.83 0.000206 0.003791
GO:1903321 negative regulation of protein modification by small protein conjugation or removal 5.66% (3/53) 4.67 0.00023 0.004148
GO:0042490 mechanoreceptor differentiation 3.77% (2/53) 6.44 0.000242 0.004281
GO:0009292 horizontal gene transfer 5.66% (3/53) 4.57 0.00028 0.004774
GO:0009294 DNA-mediated transformation 5.66% (3/53) 4.57 0.00028 0.004774
GO:0048563 post-embryonic animal organ morphogenesis 3.77% (2/53) 6.28 0.000304 0.004996
GO:0046483 heterocycle metabolic process 32.08% (17/53) 1.28 0.000302 0.005054
GO:0031492 nucleosomal DNA binding 3.77% (2/53) 6.13 0.000373 0.005917
GO:0035315 hair cell differentiation 3.77% (2/53) 6.13 0.000373 0.005917
GO:0034641 cellular nitrogen compound metabolic process 32.08% (17/53) 1.23 0.000458 0.007156
GO:0051444 negative regulation of ubiquitin-protein transferase activity 3.77% (2/53) 5.77 0.00062 0.009363
GO:1904667 negative regulation of ubiquitin protein ligase activity 3.77% (2/53) 5.77 0.00062 0.009363
GO:0006259 DNA metabolic process 13.21% (7/53) 2.24 0.000651 0.009689
GO:0009536 plastid 18.87% (10/53) 1.68 0.00095 0.013906
GO:0016070 RNA metabolic process 18.87% (10/53) 1.66 0.001035 0.014914
GO:1901362 organic cyclic compound biosynthetic process 20.75% (11/53) 1.55 0.001068 0.015156
GO:0097730 non-motile cilium 3.77% (2/53) 5.28 0.001229 0.017189
GO:0051312 obsolete chromosome decondensation 1.89% (1/53) 9.53 0.001356 0.017646
GO:0051660 establishment of centrosome localization 1.89% (1/53) 9.53 0.001356 0.017646
GO:0110029 negative regulation of meiosis I 1.89% (1/53) 9.53 0.001356 0.017646
GO:1905318 meiosis I spindle assembly checkpoint signaling 1.89% (1/53) 9.53 0.001356 0.017646
GO:0009570 chloroplast stroma 11.32% (6/53) 2.3 0.001316 0.018139
GO:0006725 cellular aromatic compound metabolic process 32.08% (17/53) 1.09 0.001469 0.018851
GO:0009532 plastid stroma 11.32% (6/53) 2.25 0.00159 0.020133
GO:1904666 regulation of ubiquitin protein ligase activity 3.77% (2/53) 4.97 0.001875 0.023428
GO:0003674 molecular_function 79.25% (42/53) 0.41 0.002142 0.02641
GO:0007605 sensory perception of sound 3.77% (2/53) 4.8 0.002378 0.028567
GO:0050954 sensory perception of mechanical stimulus 3.77% (2/53) 4.8 0.002378 0.028567
GO:0006260 DNA replication 5.66% (3/53) 3.5 0.002419 0.028688
GO:0098858 actin-based cell projection 3.77% (2/53) 4.75 0.002558 0.029964
GO:0009414 response to water deprivation 15.09% (8/53) 1.73 0.002613 0.030227
GO:0050692 DNA binding domain binding 1.89% (1/53) 8.53 0.00271 0.03023
GO:0001195 maintenance of transcriptional fidelity during transcription elongation by RNA polymerase III 1.89% (1/53) 8.53 0.00271 0.03023
GO:0004797 thymidine kinase activity 1.89% (1/53) 8.53 0.00271 0.03023
GO:0051438 regulation of ubiquitin-protein transferase activity 3.77% (2/53) 4.57 0.003238 0.035694
GO:0009415 response to water 15.09% (8/53) 1.67 0.003353 0.036532
GO:0040020 regulation of meiotic nuclear division 3.77% (2/53) 4.48 0.00366 0.039421
GO:0031491 nucleosome binding 3.77% (2/53) 4.46 0.00377 0.040138
GO:0043734 DNA-N1-methyladenine dioxygenase activity 1.89% (1/53) 7.94 0.004062 0.041374
GO:0090232 positive regulation of spindle checkpoint 1.89% (1/53) 7.94 0.004062 0.041374
GO:0090267 positive regulation of mitotic cell cycle spindle assembly checkpoint 1.89% (1/53) 7.94 0.004062 0.041374
GO:1901360 organic cyclic compound metabolic process 32.08% (17/53) 0.96 0.003934 0.041421
GO:0005774 vacuolar membrane 15.09% (8/53) 1.61 0.004274 0.043065
GO:1903320 regulation of protein modification by small protein conjugation or removal 5.66% (3/53) 3.17 0.004523 0.045086
GO:0001101 response to acid chemical 15.09% (8/53) 1.58 0.00476 0.046946
GO:0031397 negative regulation of protein ubiquitination 3.77% (2/53) 4.28 0.004821 0.047059
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_187 0.017 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_209 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_3 0.016 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_62 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_73 0.015 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_128 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_135 0.021 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_179 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (53) (download table)

InterPro Domains

GO Terms

Family Terms