SOLTUB.AGRIA.G00000039788


Description : Auxin response factor


Gene families : OG_02_0011566 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039788
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_262


Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEA AHRD
MF GO:0003700 DNA-binding transcription factor activity IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0008285 negative regulation of cell population proliferation IEA AHRD
BP GO:0009630 gravitropism IEA AHRD
BP GO:0009638 phototropism IEA AHRD
BP GO:0009723 response to ethylene IEA AHRD
BP GO:0009734 auxin-activated signaling pathway IEA AHRD
BP GO:0009737 response to abscisic acid IEA AHRD
BP GO:0009785 blue light signaling pathway IEA AHRD
BP GO:0009911 positive regulation of flower development IEA AHRD
BP GO:0009942 longitudinal axis specification IEA AHRD
BP GO:0010047 fruit dehiscence IEA AHRD
BP GO:0010150 leaf senescence IEA AHRD
BP GO:0010227 floral organ abscission IEA AHRD
BP GO:0010305 leaf vascular tissue pattern formation IEA AHRD
BP GO:0010311 lateral root formation IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045892 negative regulation of DNA-templated transcription IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
BP GO:0048481 plant ovule development IEA AHRD
BP GO:0048507 meristem development IEA AHRD
BP GO:1903288 positive regulation of potassium ion import across plasma membrane IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Predict GO terms from Neighborhoods
MF GO:0000030 mannosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0000156 phosphorelay response regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0000271 polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0001654 eye development IEP Predict GO terms from Neighborhoods
BP GO:0001893 maternal placenta development IEP Predict GO terms from Neighborhoods
BP GO:0001932 regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0001934 positive regulation of protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0001944 vasculature development IEP Predict GO terms from Neighborhoods
BP GO:0002230 positive regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0002263 cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002521 leukocyte differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002573 myeloid leukocyte differentiation IEP Predict GO terms from Neighborhoods
MF GO:0004190 aspartic-type endopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005548 phospholipid transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005628 prospore membrane IEP Predict GO terms from Neighborhoods
CC GO:0005765 lysosomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005768 endosome IEP Predict GO terms from Neighborhoods
CC GO:0005769 early endosome IEP Predict GO terms from Neighborhoods
CC GO:0005798 Golgi-associated vesicle IEP Predict GO terms from Neighborhoods
CC GO:0005802 trans-Golgi network IEP Predict GO terms from Neighborhoods
CC GO:0005844 polysome IEP Predict GO terms from Neighborhoods
CC GO:0005849 mRNA cleavage factor complex IEP Predict GO terms from Neighborhoods
BP GO:0006004 fucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0006379 mRNA cleavage IEP Predict GO terms from Neighborhoods
BP GO:0006469 negative regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0006509 membrane protein ectodomain proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0006656 phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006657 CDP-choline pathway IEP Predict GO terms from Neighborhoods
BP GO:0006723 cuticle hydrocarbon biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006893 Golgi to plasma membrane transport IEP Predict GO terms from Neighborhoods
BP GO:0006896 Golgi to vacuole transport IEP Predict GO terms from Neighborhoods
BP GO:0006900 vesicle budding from membrane IEP Predict GO terms from Neighborhoods
BP GO:0006907 pinocytosis IEP Predict GO terms from Neighborhoods
BP GO:0006909 phagocytosis IEP Predict GO terms from Neighborhoods
BP GO:0007044 cell-substrate junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0007127 meiosis I IEP Predict GO terms from Neighborhoods
BP GO:0007155 cell adhesion IEP Predict GO terms from Neighborhoods
BP GO:0007176 regulation of epidermal growth factor-activated receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007423 sensory organ development IEP Predict GO terms from Neighborhoods
BP GO:0007507 heart development IEP Predict GO terms from Neighborhoods
MF GO:0008081 phosphoric diester hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0008152 metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008187 poly-pyrimidine tract binding IEP Predict GO terms from Neighborhoods
MF GO:0008266 poly(U) RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0008525 phosphatidylcholine transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008526 phosphatidylinositol transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0009423 chorismate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009686 gibberellin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009750 response to fructose IEP Predict GO terms from Neighborhoods
BP GO:0009787 regulation of abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009800 cinnamic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009803 cinnamic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010082 regulation of root meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010112 regulation of systemic acquired resistance IEP Predict GO terms from Neighborhoods
BP GO:0010119 regulation of stomatal movement IEP Predict GO terms from Neighborhoods
BP GO:0010363 regulation of plant-type hypersensitive response IEP Predict GO terms from Neighborhoods
CC GO:0010369 chromocenter IEP Predict GO terms from Neighborhoods
BP GO:0010383 cell wall polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010395 rhamnogalacturonan I metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010411 xyloglucan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010469 regulation of signaling receptor activity IEP Predict GO terms from Neighborhoods
BP GO:0010492 maintenance of shoot apical meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010562 positive regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010563 negative regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010632 regulation of epithelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0010634 positive regulation of epithelial cell migration IEP Predict GO terms from Neighborhoods
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0016051 carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0017005 3'-tyrosyl-DNA phosphodiesterase activity IEP Predict GO terms from Neighborhoods
BP GO:0019216 regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019220 regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0021987 cerebral cortex development IEP Predict GO terms from Neighborhoods
BP GO:0030099 myeloid cell differentiation IEP Predict GO terms from Neighborhoods
MF GO:0030371 translation repressor activity IEP Predict GO terms from Neighborhoods
CC GO:0030658 transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030660 Golgi-associated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031048 small non-coding RNA-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0031098 stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0031149 sorocarp stalk cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0031293 membrane protein intracellular domain proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0031322 ascospore-type prospore-specific spindle pole body remodeling IEP Predict GO terms from Neighborhoods
BP GO:0031344 regulation of cell projection organization IEP Predict GO terms from Neighborhoods
BP GO:0031401 positive regulation of protein modification process IEP Predict GO terms from Neighborhoods
CC GO:0031410 cytoplasmic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0031581 hemidesmosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0031935 obsolete regulation of chromatin silencing IEP Predict GO terms from Neighborhoods
CC GO:0031982 vesicle IEP Predict GO terms from Neighborhoods
CC GO:0031984 organelle subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0032153 cell division site IEP Predict GO terms from Neighborhoods
BP GO:0032469 endoplasmic reticulum calcium ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0032870 cellular response to hormone stimulus IEP Predict GO terms from Neighborhoods
BP GO:0033120 positive regulation of RNA splicing IEP Predict GO terms from Neighborhoods
BP GO:0033619 membrane protein proteolysis IEP Predict GO terms from Neighborhoods
BP GO:0033673 negative regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0034046 poly(G) binding IEP Predict GO terms from Neighborhoods
BP GO:0034052 positive regulation of plant-type hypersensitive response IEP Predict GO terms from Neighborhoods
BP GO:0034205 amyloid-beta formation IEP Predict GO terms from Neighborhoods
BP GO:0034329 cell junction assembly IEP Predict GO terms from Neighborhoods
BP GO:0035017 cuticle pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0035282 segmentation IEP Predict GO terms from Neighborhoods
BP GO:0035333 Notch receptor processing, ligand-dependent IEP Predict GO terms from Neighborhoods
MF GO:0035613 RNA stem-loop binding IEP Predict GO terms from Neighborhoods
CC GO:0035619 root hair tip IEP Predict GO terms from Neighborhoods
CC GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network IEP Predict GO terms from Neighborhoods
BP GO:0042325 regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0042327 positive regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0042982 amyloid precursor protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042987 amyloid precursor protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043001 Golgi to plasma membrane protein transport IEP Predict GO terms from Neighborhoods
BP GO:0043085 positive regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0043170 macromolecule metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043186 P granule IEP Predict GO terms from Neighborhoods
BP GO:0043549 regulation of kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043903 regulation of biological process involved in symbiotic interaction IEP Predict GO terms from Neighborhoods
BP GO:0043949 regulation of cAMP-mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0044030 regulation of DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0044036 cell wall macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044093 positive regulation of molecular function IEP Predict GO terms from Neighborhoods
BP GO:0044237 cellular metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044262 cellular carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044264 cellular polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044351 macropinocytosis IEP Predict GO terms from Neighborhoods
BP GO:0044671 sorocarp spore cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0045723 positive regulation of fatty acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045833 negative regulation of lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045859 regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0045936 negative regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045937 positive regulation of phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046417 chorismate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046470 phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046890 regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0047484 regulation of response to osmotic stress IEP Predict GO terms from Neighborhoods
BP GO:0048026 positive regulation of mRNA splicing, via spliceosome IEP Predict GO terms from Neighborhoods
BP GO:0048143 astrocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0048167 regulation of synaptic plasticity IEP Predict GO terms from Neighborhoods
BP GO:0048194 Golgi vesicle budding IEP Predict GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0048768 root hair cell tip growth IEP Predict GO terms from Neighborhoods
BP GO:0048864 stem cell development IEP Predict GO terms from Neighborhoods
BP GO:0050435 amyloid-beta metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0050685 positive regulation of mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0050688 regulation of defense response to virus IEP Predict GO terms from Neighborhoods
BP GO:0050691 regulation of defense response to virus by host IEP Predict GO terms from Neighborhoods
BP GO:0050730 regulation of peptidyl-tyrosine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0051055 negative regulation of lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0051174 regulation of phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051247 positive regulation of protein metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051338 regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051347 positive regulation of transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051403 stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0052325 cell wall pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0060135 maternal process involved in female pregnancy IEP Predict GO terms from Neighborhoods
BP GO:0060429 epithelium development IEP Predict GO terms from Neighborhoods
BP GO:0061053 somite development IEP Predict GO terms from Neighborhoods
BP GO:0061097 regulation of protein tyrosine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0061900 glial cell activation IEP Predict GO terms from Neighborhoods
BP GO:0061951 establishment of protein localization to plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
CC GO:0062039 biofilm matrix IEP Predict GO terms from Neighborhoods
CC GO:0062040 fungal biofilm matrix IEP Predict GO terms from Neighborhoods
MF GO:0070001 aspartic-type peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0070259 tyrosyl-DNA phosphodiesterase activity IEP Predict GO terms from Neighborhoods
MF GO:0070717 poly-purine tract binding IEP Predict GO terms from Neighborhoods
CC GO:0070765 gamma-secretase complex IEP Predict GO terms from Neighborhoods
BP GO:0071071 regulation of phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071072 negative regulation of phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071495 cellular response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071705 nitrogen compound transport IEP Predict GO terms from Neighborhoods
BP GO:0071840 cellular component organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0072396 response to cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072402 response to DNA integrity checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0072423 response to DNA damage checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0080036 regulation of cytokinin-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0080091 regulation of raffinose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080113 regulation of seed growth IEP Predict GO terms from Neighborhoods
BP GO:0080134 regulation of response to stress IEP Predict GO terms from Neighborhoods
BP GO:0080188 gene silencing by RNA-directed DNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
CC GO:0097060 synaptic membrane IEP Predict GO terms from Neighborhoods
CC GO:0097708 intracellular vesicle IEP Predict GO terms from Neighborhoods
BP GO:0098787 mRNA cleavage involved in mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0098789 pre-mRNA cleavage required for polyadenylation IEP Predict GO terms from Neighborhoods
CC GO:0098791 Golgi apparatus subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0098797 plasma membrane protein complex IEP Predict GO terms from Neighborhoods
MF GO:0120013 lipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120014 phospholipid transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0150115 cell-substrate junction organization IEP Predict GO terms from Neighborhoods
BP GO:0150172 regulation of phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0150174 negative regulation of phosphatidylcholine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900377 negative regulation of secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1900384 regulation of flavonol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1901332 negative regulation of lateral root development IEP Predict GO terms from Neighborhoods
BP GO:1901419 regulation of response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:1901672 positive regulation of systemic acquired resistance IEP Predict GO terms from Neighborhoods
BP GO:1901957 regulation of cutin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902288 regulation of defense response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:1902290 positive regulation of defense response to oomycetes IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903085 regulation of sinapate ester biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903086 negative regulation of sinapate ester biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903684 regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903688 positive regulation of border follicle cell migration IEP Predict GO terms from Neighborhoods
BP GO:1903725 regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903726 negative regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1905957 regulation of cellular response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:2000031 regulation of salicylic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000035 regulation of stem cell division IEP Predict GO terms from Neighborhoods
BP GO:2000069 regulation of post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:2000280 regulation of root development IEP Predict GO terms from Neighborhoods
BP GO:2001245 regulation of phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2001246 negative regulation of phosphatidylcholine biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR015300 DNA-bd_pseudobarrel_sf 114 258
IPR010525 ARF_dom 255 337
IPR003340 B3_DNA-bd 129 230
No external refs found!