SOLTUB.AGRIA.G00000039791


Description : Dead-box atp-dependent rna helicase 53


Gene families : OG_02_0011565 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039791
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_50


Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IEA AHRD
BP GO:0002735 positive regulation of myeloid dendritic cell cytokine production IEA AHRD
MF GO:0003677 DNA binding IEA AHRD
MF GO:0003724 RNA helicase activity IEA AHRD
MF GO:0003725 double-stranded RNA binding IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005618 cell wall IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006364 rRNA processing IEA AHRD
BP GO:0006366 transcription by RNA polymerase II IEA AHRD
BP GO:0009409 response to cold IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
BP GO:0009615 response to virus IEA AHRD
BP GO:0009651 response to salt stress IEA AHRD
BP GO:0009658 chloroplast organization IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
MF GO:0016787 hydrolase activity IEA AHRD
MF GO:0019843 rRNA binding IEA AHRD
MF GO:0030515 snoRNA binding IEA AHRD
CC GO:0032991 protein-containing complex IEA AHRD
MF GO:0035198 miRNA binding IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA AHRD
BP GO:0043330 response to exogenous dsRNA IEA AHRD
MF GO:0046872 metal ion binding IEA AHRD
BP GO:0062176 R-loop disassembly IEA AHRD
MF GO:0097322 7SK snRNA binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity IEP Predict GO terms from Neighborhoods
CC GO:0000427 plastid-encoded plastid RNA polymerase complex IEP Predict GO terms from Neighborhoods
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0000470 maturation of LSU-rRNA IEP Predict GO terms from Neighborhoods
BP GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
BP GO:0001510 RNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0001522 pseudouridine synthesis IEP Predict GO terms from Neighborhoods
BP GO:0001682 tRNA 5'-leader removal IEP Predict GO terms from Neighborhoods
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0003933 GTP cyclohydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0003935 GTP cyclohydrolase II activity IEP Predict GO terms from Neighborhoods
MF GO:0004325 ferrochelatase activity IEP Predict GO terms from Neighborhoods
MF GO:0004518 nuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004521 endoribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004526 ribonuclease P activity IEP Predict GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004549 tRNA-specific ribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0005525 GTP binding IEP Predict GO terms from Neighborhoods
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006225 UDP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006241 CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006264 mitochondrial DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006390 mitochondrial transcription IEP Predict GO terms from Neighborhoods
BP GO:0006771 riboflavin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006783 heme biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008174 mRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008408 3'-5' exonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008649 rRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0009041 uridylate kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009132 nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009133 nucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009138 pyrimidine nucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009139 pyrimidine nucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009147 pyrimidine nucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009148 pyrimidine nucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009188 ribonucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009193 pyrimidine ribonucleoside diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009194 pyrimidine ribonucleoside diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009208 pyrimidine ribonucleoside triphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009209 pyrimidine ribonucleoside triphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009218 pyrimidine ribonucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009220 pyrimidine ribonucleotide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009231 riboflavin biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009295 nucleoid IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
CC GO:0009501 amyloplast IEP Predict GO terms from Neighborhoods
CC GO:0009507 chloroplast IEP Predict GO terms from Neighborhoods
CC GO:0009508 plastid chromosome IEP Predict GO terms from Neighborhoods
CC GO:0009536 plastid IEP Predict GO terms from Neighborhoods
MF GO:0009982 pseudouridine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0016074 sno(s)RNA metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016422 mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016433 rRNA (adenine) methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predict GO terms from Neighborhoods
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016866 intramolecular transferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0019001 guanyl nucleotide binding IEP Predict GO terms from Neighborhoods
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0019238 cyclohydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0030490 maturation of SSU-rRNA IEP Predict GO terms from Neighborhoods
CC GO:0030880 RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0031167 rRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0032042 mitochondrial DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032544 plastid translation IEP Predict GO terms from Neighborhoods
MF GO:0032561 guanyl ribonucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0033258 plastid DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033259 plastid DNA replication IEP Predict GO terms from Neighborhoods
MF GO:0033862 UMP kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0034061 DNA polymerase activity IEP Predict GO terms from Neighborhoods
MF GO:0034062 5'-3' RNA polymerase activity IEP Predict GO terms from Neighborhoods
CC GO:0034245 mitochondrial DNA-directed RNA polymerase complex IEP Predict GO terms from Neighborhoods
BP GO:0042168 heme metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042254 ribosome biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0042644 chloroplast nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042645 mitochondrial nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042646 plastid nucleoid IEP Predict GO terms from Neighborhoods
BP GO:0042726 flavin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043144 sno(s)RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0043414 macromolecule methylation IEP Predict GO terms from Neighborhoods
BP GO:0044210 'de novo' CTP biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046036 CTP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046048 UDP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046940 nucleoside monophosphate phosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0050145 nucleoside monophosphate kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predict GO terms from Neighborhoods
BP GO:0071897 DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080009 mRNA methylation IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
MF GO:0097747 RNA polymerase activity IEP Predict GO terms from Neighborhoods
BP GO:0099116 tRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0140102 catalytic activity, acting on a rRNA IEP Predict GO terms from Neighborhoods
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR001650 Helicase_C 319 417
IPR011545 DEAD/DEAH_box_helicase_dom 135 302
IPR027417 P-loop_NTPase 185 434
No external refs found!