SOLTUB.AGRIA.G00000039797

Description : Pectin lyase-like superfamily protein, putative

Gene families : OG_02_0002732 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000039797
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_180

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	IEA	AHRD
CC	GO:0005618	cell wall	IEA	AHRD
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009555	pollen development	IEA	AHRD
BP	GO:0009846	pollen germination	IEA	AHRD
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009901	anther dehiscence	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010047	fruit dehiscence	IEA	AHRD
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0019863	IgE binding	IEA	AHRD
MF	GO:0019865	immunoglobulin binding	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031982	vesicle	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043667	pollen wall	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEA	AHRD
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048868	pollen tube development	IEA	AHRD
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000109	nucleotide-excision repair complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001667	ameboidal-type cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0001702	gastrulation with mouth forming second	IEP	Predict GO terms from Neighborhoods
BP	GO:0002183	cytoplasmic translational initiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003979	UDP-glucose 6-dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003993	acid phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005338	nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005354	galactose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005355	glucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005365	myo-inositol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005464	UDP-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006023	aminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006024	glycosaminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006065	UDP-glucuronate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006071	glycerol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006073	cellular glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007365	periodic partitioning	IEP	Predict GO terms from Neighborhoods
BP	GO:0007367	segment polarity determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007427	epithelial cell migration, open tracheal system	IEP	Predict GO terms from Neighborhoods
BP	GO:0007509	mesoderm migration involved in gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008078	mesodermal cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0008417	fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008543	fibroblast growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009229	thiamine diphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009250	glucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009969	xyloglucan biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010631	epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0015014	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0015146	pentose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015148	D-xylose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015165	pyrimidine nucleotide-sugar transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015168	glycerol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015575	mannitol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015576	sorbitol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015591	D-ribose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015750	pentose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015780	nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015790	UDP-xylose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015798	myo-inositol transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016759	cellulose synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016866	intramolecular transferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0018991	oviposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0019098	reproductive behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019322	pentose biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019400	alditol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019432	triglyceride biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019566	arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019567	arabinose biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030204	chondroitin sulfate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030206	chondroitin sulfate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031127	alpha-(1,2)-fucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
MF	GO:0032029	myosin tail binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032036	myosin heavy chain binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0033356	UDP-L-arabinose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034389	lipid droplet organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0040025	vulval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042074	cell migration involved in gastrulation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042131	thiamine phosphate phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042357	thiamine diphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044042	glucan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044249	cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044283	small molecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046027	phospholipid:diacylglycerol acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046460	neutral lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046463	acylglycerol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047312	L-phenylalanine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048569	post-embryonic animal organ development	IEP	Predict GO terms from Neighborhoods
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050997	quaternary ammonium group binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051704	obsolete multi-organism process	IEP	Predict GO terms from Neighborhoods
MF	GO:0052582	(+)-menthofuran synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052691	UDP-arabinopyranose mutase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052731	phosphocholine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052732	phosphoethanolamine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070085	glycosylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070546	L-phenylalanine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070547	L-tyrosine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080098	L-tyrosine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080100	L-glutamine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080115	myosin XI tail binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090130	tissue migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0090406	pollen tube	IEP	Predict GO terms from Neighborhoods
BP	GO:0090481	pyrimidine nucleotide-sugar transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0097038	perinuclear endoplasmic reticulum	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0102627	parthenolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102628	costunolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102876	psoralen synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102995	angelicin synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0140042	lipid droplet formation	IEP	Predict GO terms from Neighborhoods
BP	GO:1900259	regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900260	negative regulation of RNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903510	mucopolysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	29	345
IPR011050	Pectin_lyase_fold/virulence	3	360

External Links

No external refs found!

SOLTUB.AGRIA.G00000039797

Expression Profile

Co-expression Networks

Functional Annotation