SOLTUB.AGRIA.G00000040205

Description : DNA-directed RNA polymerase family protein

Gene families : OG_02_0011538 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040205
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_81

Type	GO Term	Name	Evidence	Source
CC	GO:0000428	DNA-directed RNA polymerase complex	None	Extended
MF	GO:0001054	RNA polymerase I activity	IEA	AHRD
MF	GO:0001056	RNA polymerase III activity	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005666	RNA polymerase III complex	IEA	AHRD
CC	GO:0005736	RNA polymerase I complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	None	Extended
BP	GO:0006360	transcription by RNA polymerase I	IEA	AHRD
BP	GO:0006383	transcription by RNA polymerase III	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009304	tRNA transcription	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
CC	GO:0030880	RNA polymerase complex	None	Extended
BP	GO:0032196	transposition	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0042797	tRNA transcription by RNA polymerase III	IEA	AHRD
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	None	Extended
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	None	Extended
BP	GO:0070893	transposon integration	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
BP	GO:0098781	ncRNA transcription	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000177	cytoplasmic exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predict GO terms from Neighborhoods
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0001750	photoreceptor outer segment	IEP	Predict GO terms from Neighborhoods
BP	GO:0001837	epithelial to mesenchymal transition	IEP	Predict GO terms from Neighborhoods
BP	GO:0001893	maternal placenta development	IEP	Predict GO terms from Neighborhoods
MF	GO:0003697	single-stranded DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0004527	exonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004637	phosphoribosylamine-glycine ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004641	phosphoribosylformylglycinamidine cyclo-ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005844	polysome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005849	mRNA cleavage factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006144	purine nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006188	IMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006189	'de novo' IMP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006356	regulation of transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	Predict GO terms from Neighborhoods
BP	GO:0006364	rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006379	mRNA cleavage	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006401	RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006402	mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007283	spermatogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007319	negative regulation of oskar mRNA translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008187	poly-pyrimidine tract binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008266	poly(U) RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008283	cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0008408	3'-5' exonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009124	nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009127	purine nucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009156	ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009165	nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009890	negative regulation of biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009892	negative regulation of metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010468	regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010629	negative regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010634	positive regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0016071	mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016072	rRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016074	sno(s)RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016075	rRNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016180	snRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016882	cyclo-ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0017148	negative regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0030335	positive regulation of cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0030371	translation repressor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031123	RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031126	sno(s)RNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031327	negative regulation of cellular biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033120	positive regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
MF	GO:0034046	poly(G) binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034249	negative regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034427	nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	IEP	Predict GO terms from Neighborhoods
BP	GO:0034470	ncRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034472	snRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034475	U4 snRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0034661	ncRNA catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0035613	RNA stem-loop binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0040017	positive regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0043144	sno(s)RNA processing	IEP	Predict GO terms from Neighborhoods
CC	GO:0043186	P granule	IEP	Predict GO terms from Neighborhoods
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0043484	regulation of RNA splicing	IEP	Predict GO terms from Neighborhoods
BP	GO:0043628	small regulatory ncRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045892	negative regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045943	positive regulation of transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0046011	regulation of oskar mRNA translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046083	adenine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046084	adenine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046112	nucleobase biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048024	regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0048026	positive regulation of mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0048027	mRNA 5'-UTR binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0048232	male gamete generation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048762	mesenchymal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048864	stem cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050684	regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050685	positive regulation of mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050764	regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0050766	positive regulation of phagocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0060135	maternal process involved in female pregnancy	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
MF	GO:0070717	poly-purine tract binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071025	RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071027	nuclear RNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071028	nuclear mRNA surveillance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071051	polyadenylation-dependent snoRNA 3'-end processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0071216	cellular response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0072396	response to cell cycle checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0072402	response to DNA integrity checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0072423	response to DNA damage checkpoint signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0072522	purine-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0098787	mRNA cleavage involved in mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0098789	pre-mRNA cleavage required for polyadenylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0099522	cytosolic region	IEP	Predict GO terms from Neighborhoods
CC	GO:0099523	presynaptic cytosol	IEP	Predict GO terms from Neighborhoods
MF	GO:0140416	transcription regulator inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902679	negative regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903313	positive regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:1903684	regulation of border follicle cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:1903688	positive regulation of border follicle cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2000147	positive regulation of cell motility	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036603	RBP11-like	84	392
IPR011262	DNA-dir_RNA_pol_insert	129	277
IPR011263	DNA-dir_RNA_pol_RpoA/D/Rpb3	99	385
IPR036643	RNApol_insert_sf	122	278

External Links

No external refs found!

SOLTUB.AGRIA.G00000040205

Expression Profile

Co-expression Networks

Functional Annotation