SOLTUB.AGRIA.G00000040767

Description : NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic

Gene families : OG_02_0018037 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000040767
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_109

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000040506	No alias	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000040506	No alias	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	0.08	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000040506	No alias	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic	0.08	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003954	NADH dehydrogenase activity	None	Extended
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006091	generation of precursor metabolites and energy	None	Extended
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0009055	electron transfer activity	None	Extended
CC	GO:0009535	chloroplast thylakoid membrane	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	None	Extended
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	None	Extended
BP	GO:0019684	photosynthesis, light reaction	IEA	AHRD
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0022900	electron transport chain	None	Extended
BP	GO:0022904	respiratory electron transport chain	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0034357	photosynthetic membrane	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
CC	GO:0042651	thylakoid membrane	None	Extended
BP	GO:0042773	ATP synthesis coupled electron transport	IEA	AHRD
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0048038	quinone binding	IEA	AHRD
MF	GO:0050136	NADH dehydrogenase (quinone) activity	None	Extended
CC	GO:0055035	plastid thylakoid membrane	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000315	organellar large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0001882	nucleoside binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003735	structural constituent of ribosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0005216	ion channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005261	cation channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005506	iron ion binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005762	mitochondrial large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0006164	purine nucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006412	translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006754	ATP biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009142	nucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009152	purine ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0009521	photosystem	IEP	Predict GO terms from Neighborhoods
CC	GO:0009522	photosystem I	IEP	Predict GO terms from Neighborhoods
CC	GO:0009523	photosystem II	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009575	chromoplast stroma	IEP	Predict GO terms from Neighborhoods
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009767	photosynthetic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0009772	photosynthetic electron transport in photosystem II	IEP	Predict GO terms from Neighborhoods
BP	GO:0010207	photosystem II assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0010242	oxygen evolving activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015252	proton channel activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0015934	large ribosomal subunit	IEP	Predict GO terms from Neighborhoods
BP	GO:0015979	photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0015986	proton motive force-driven ATP synthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0016168	chlorophyll binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016984	ribulose-bisphosphate carboxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018298	obsolete protein-chromophore linkage	IEP	Predict GO terms from Neighborhoods
BP	GO:0019253	reductive pentose-phosphate cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0019685	photosynthesis, dark reaction	IEP	Predict GO terms from Neighborhoods
MF	GO:0019829	ATPase-coupled cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031361	integral component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032543	mitochondrial translation	IEP	Predict GO terms from Neighborhoods
MF	GO:0032549	ribonucleoside binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0033178	proton-transporting two-sector ATPase complex, catalytic domain	IEP	Predict GO terms from Neighborhoods
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042776	proton motive force-driven mitochondrial ATP synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0043043	peptide biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)	IEP	Predict GO terms from Neighborhoods
BP	GO:0046034	ATP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046906	tetrapyrrole binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0051540	metal cluster binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0062091	Ycf2/FtsHi complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0097159	organic cyclic compound binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0098796	membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1901363	heterocyclic compound binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001750	ND/Mrp_mem	1	136

External Links

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SOLTUB.AGRIA.G00000040767

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation