SOLTUB.AGRIA.G00000004118

Description : F-box protein

Gene families : OG_02_0012365 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004118
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_60

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005737	cytoplasm	IEA	AHRD
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	IEA	AHRD
BP	GO:0009987	cellular process	IEA	AHRD
BP	GO:0022414	reproductive process	None	Extended
MF	GO:0030246	carbohydrate binding	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	IEA	AHRD
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0000278	mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005381	iron ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005385	zinc ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006812	cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006826	iron ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006829	zinc ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010038	response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015675	nickel cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015691	cadmium ion transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030001	metal ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055072	iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055076	transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0070012	oligopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071577	zinc ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001810	F-box_dom	8	53
IPR025886	PP2-like	102	284
IPR036047	F-box-like_dom_sf	9	81

External Links

No external refs found!

SOLTUB.AGRIA.G00000004118

Expression Profile

Co-expression Networks

Functional Annotation