SOLTUB.AGRIA.G00000041740

Description : F-box-like/WD repeat-containing protein

Gene families : OG_02_0017484 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041740
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_142

Type	GO Term	Name	Evidence	Source
CC	GO:0000118	histone deacetylase complex	IEA	AHRD
BP	GO:0000122	negative regulation of transcription by RNA polymerase II	IEA	AHRD
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0000976	transcription cis-regulatory region binding	IEA	AHRD
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
BP	GO:0001835	blastocyst hatching	IEA	AHRD
BP	GO:0002021	response to dietary excess	IEA	AHRD
BP	GO:0003008	system process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003682	chromatin binding	IEA	AHRD
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003712	transcription coregulator activity	None	Extended
MF	GO:0003714	transcription corepressor activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
CC	GO:0005694	chromosome	None	Extended
CC	GO:0005700	polytene chromosome	IEA	AHRD
CC	GO:0005819	spindle	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006357	regulation of transcription by RNA polymerase II	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	IEA	AHRD
BP	GO:0007423	sensory organ development	None	Extended
BP	GO:0007600	sensory perception	None	Extended
BP	GO:0007605	sensory perception of sound	IEA	AHRD
MF	GO:0008013	beta-catenin binding	IEA	AHRD
MF	GO:0008022	protein C-terminus binding	IEA	AHRD
MF	GO:0008134	transcription factor binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008587	imaginal disc-derived wing margin morphogenesis	IEA	AHRD
BP	GO:0008593	regulation of Notch signaling pathway	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IEA	AHRD
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009886	post-embryonic animal morphogenesis	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009968	negative regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0010648	negative regulation of cell communication	None	Extended
BP	GO:0010941	regulation of cell death	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0016042	lipid catabolic process	IEA	AHRD
MF	GO:0016740	transferase activity	IEA	AHRD
CC	GO:0017053	transcription repressor complex	IEA	AHRD
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019725	cellular homeostasis	None	Extended
MF	GO:0019904	protein domain specific binding	IEA	AHRD
BP	GO:0022416	chaeta development	IEA	AHRD
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0023057	negative regulation of signaling	None	Extended
BP	GO:0030111	regulation of Wnt signaling pathway	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030162	regulation of proteolysis	None	Extended
BP	GO:0030177	positive regulation of Wnt signaling pathway	None	Extended
BP	GO:0031056	regulation of histone modification	None	Extended
BP	GO:0031058	positive regulation of histone modification	None	Extended
BP	GO:0031063	regulation of histone deacetylation	None	Extended
BP	GO:0031065	positive regulation of histone deacetylation	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0031647	regulation of protein stability	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032872	regulation of stress-activated MAPK cascade	None	Extended
BP	GO:0032873	negative regulation of stress-activated MAPK cascade	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0035188	hatching	None	Extended
BP	GO:0035264	multicellular organism growth	IEA	AHRD
BP	GO:0040007	growth	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042058	regulation of epidermal growth factor receptor signaling pathway	IEA	AHRD
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
MF	GO:0042393	histone binding	IEA	AHRD
BP	GO:0042461	photoreceptor cell development	IEA	AHRD
BP	GO:0042592	homeostatic process	None	Extended
MF	GO:0042802	identical protein binding	IEA	AHRD
BP	GO:0042981	regulation of apoptotic process	None	Extended
BP	GO:0043066	negative regulation of apoptotic process	None	Extended
BP	GO:0043067	regulation of programmed cell death	None	Extended
BP	GO:0043069	negative regulation of programmed cell death	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043408	regulation of MAPK cascade	None	Extended
BP	GO:0043409	negative regulation of MAPK cascade	None	Extended
BP	GO:0043523	regulation of neuron apoptotic process	None	Extended
BP	GO:0043524	negative regulation of neuron apoptotic process	IEA	AHRD
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043627	response to estrogen	IEA	AHRD
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045444	fat cell differentiation	None	Extended
BP	GO:0045570	regulation of imaginal disc growth	None	Extended
BP	GO:0045572	positive regulation of imaginal disc growth	IEA	AHRD
BP	GO:0045732	positive regulation of protein catabolic process	None	Extended
BP	GO:0045747	positive regulation of Notch signaling pathway	IEA	AHRD
BP	GO:0045862	positive regulation of proteolysis	None	Extended
BP	GO:0045892	negative regulation of DNA-templated transcription	None	Extended
BP	GO:0045893	positive regulation of DNA-templated transcription	None	Extended
BP	GO:0045927	positive regulation of growth	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEA	AHRD
BP	GO:0046328	regulation of JNK cascade	None	Extended
BP	GO:0046329	negative regulation of JNK cascade	IEA	AHRD
MF	GO:0047485	protein N-terminus binding	IEA	AHRD
BP	GO:0048468	cell development	None	Extended
BP	GO:0048513	animal organ development	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048545	response to steroid hormone	IEA	AHRD
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048585	negative regulation of response to stimulus	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048639	positive regulation of developmental growth	None	Extended
BP	GO:0048666	neuron development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050821	protein stabilization	IEA	AHRD
BP	GO:0050872	white fat cell differentiation	IEA	AHRD
BP	GO:0050877	nervous system process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0050954	sensory perception of mechanical stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060249	anatomical structure homeostasis	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060548	negative regulation of cell death	None	Extended
BP	GO:0060612	adipose tissue development	None	Extended
BP	GO:0060613	fat pad development	IEA	AHRD
BP	GO:0060828	regulation of canonical Wnt signaling pathway	None	Extended
BP	GO:0061136	regulation of proteasomal protein catabolic process	None	Extended
BP	GO:0061448	connective tissue development	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070050	neuron cellular homeostasis	IEA	AHRD
BP	GO:0070302	regulation of stress-activated protein kinase signaling cascade	None	Extended
BP	GO:0070303	negative regulation of stress-activated protein kinase signaling cascade	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	IEA	AHRD
BP	GO:0071684	organism emergence from protective structure	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0072686	mitotic spindle	IEA	AHRD
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080134	regulation of response to stress	None	Extended
BP	GO:0080135	regulation of cellular response to stress	None	Extended
BP	GO:0090207	regulation of triglyceride metabolic process	IEA	AHRD
BP	GO:0090263	positive regulation of canonical Wnt signaling pathway	IEA	AHRD
BP	GO:0090311	regulation of protein deacetylation	None	Extended
BP	GO:0090312	positive regulation of protein deacetylation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:0140297	DNA-binding transcription factor binding	IEA	AHRD
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901184	regulation of ERBB signaling pathway	None	Extended
BP	GO:1901214	regulation of neuron death	None	Extended
BP	GO:1901215	negative regulation of neuron death	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901800	positive regulation of proteasomal protein catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902531	regulation of intracellular signal transduction	None	Extended
BP	GO:1902532	negative regulation of intracellular signal transduction	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903052	positive regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
CC	GO:1990234	transferase complex	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000322	storage vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000323	lytic vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000324	fungal-type vacuole	IEP	Predict GO terms from Neighborhoods
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006081	cellular aldehyde metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006836	neurotransmitter transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006865	amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006952	defense response	IEP	Predict GO terms from Neighborhoods
CC	GO:0008021	synaptic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009607	response to biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
MF	GO:0015020	glucuronosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015171	amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016098	monoterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016099	monoterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016138	glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0030133	transport vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0042995	cell projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0043207	response to external biotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	Predict GO terms from Neighborhoods
BP	GO:0046184	aldehyde biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050403	trans-zeatin O-beta-D-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050502	cis-zeatin O-beta-D-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050525	cutinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051707	response to other organism	IEP	Predict GO terms from Neighborhoods
CC	GO:0070382	exocytic vesicle	IEP	Predict GO terms from Neighborhoods
MF	GO:0080043	quercetin 3-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098542	defense response to other organism	IEP	Predict GO terms from Neighborhoods
CC	GO:0099503	secretory vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0120025	plasma membrane bounded cell projection	IEP	Predict GO terms from Neighborhoods
BP	GO:0120255	olefinic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900992	(-)-secologanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900994	(-)-secologanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901804	beta-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901806	beta-glucoside biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036322	WD40_repeat_dom_sf	161	482
IPR001680	WD40_repeat	406	443
IPR001680	WD40_repeat	257	293
IPR001680	WD40_repeat	224	252
IPR001680	WD40_repeat	160	192
IPR001680	WD40_repeat	356	401
IPR006594	LisH	7	33

External Links

No external refs found!

SOLTUB.AGRIA.G00000041740

Expression Profile

Co-expression Networks

Functional Annotation