SOLTUB.AGRIA.G00000041807

Description : 5'-3' exoribonuclease 2

Gene families : OG_02_0011454 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041807
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_165

Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEA	AHRD
BP	GO:0000291	nuclear-transcribed mRNA catabolic process, exonucleolytic	IEA	AHRD
BP	GO:0000448	cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA	AHRD
BP	GO:0000469	cleavage involved in rRNA processing	None	Extended
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	None	Extended
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	None	Extended
BP	GO:0000738	DNA catabolic process, exonucleolytic	IEA	AHRD
BP	GO:0000902	cell morphogenesis	None	Extended
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	None	Extended
BP	GO:0000966	RNA 5'-end processing	None	Extended
BP	GO:0000967	rRNA 5'-end processing	IEA	AHRD
MF	GO:0000976	transcription cis-regulatory region binding	None	Extended
MF	GO:0001067	transcription regulatory region nucleic acid binding	None	Extended
MF	GO:0001147	transcription termination site sequence-specific DNA binding	IEA	AHRD
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	exoribonuclease activity	None	Extended
MF	GO:0004534	5'-3' exoribonuclease activity	IEA	AHRD
MF	GO:0004540	ribonuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005844	polysome	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	IEA	AHRD
BP	GO:0006308	DNA catabolic process	None	Extended
BP	GO:0006310	DNA recombination	IEA	AHRD
BP	GO:0006353	DNA-templated transcription termination	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0006364	rRNA processing	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	IEA	AHRD
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0007017	microtubule-based process	IEA	AHRD
BP	GO:0007276	gamete generation	None	Extended
BP	GO:0007283	spermatogenesis	IEA	AHRD
BP	GO:0007399	nervous system development	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	AHRD
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
MF	GO:0008409	5'-3' exonuclease activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009826	unidimensional cell growth	IEA	AHRD
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010087	phloem or xylem histogenesis	IEA	AHRD
BP	GO:0010286	heat acclimation	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
CC	GO:0010494	cytoplasmic stress granule	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010586	miRNA metabolic process	None	Extended
BP	GO:0010587	miRNA catabolic process	IEA	AHRD
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0016075	rRNA catabolic process	None	Extended
BP	GO:0016078	tRNA catabolic process	None	Extended
CC	GO:0016234	inclusion body	None	Extended
CC	GO:0016235	aggresome	IEA	AHRD
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034471	ncRNA 5'-end processing	None	Extended
BP	GO:0034605	cellular response to heat	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0034661	ncRNA catabolic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
BP	GO:0036260	RNA capping	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0040028	regulation of vulval development	IEA	AHRD
BP	GO:0040029	epigenetic regulation of gene expression	IEA	AHRD
BP	GO:0040034	regulation of development, heterochronic	IEA	AHRD
MF	GO:0042802	identical protein binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043633	polyadenylation-dependent RNA catabolic process	None	Extended
BP	GO:0043634	polyadenylation-dependent ncRNA catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048232	male gamete generation	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051301	cell division	IEA	AHRD
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051983	regulation of chromosome segregation	None	Extended
BP	GO:0051984	positive regulation of chromosome segregation	IEA	AHRD
BP	GO:0060147	regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060149	negative regulation of post-transcriptional gene silencing	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060964	regulation of miRNA-mediated gene silencing	None	Extended
BP	GO:0060965	negative regulation of miRNA-mediated gene silencing	IEA	AHRD
BP	GO:0060966	regulation of gene silencing by RNA	None	Extended
BP	GO:0060967	negative regulation of gene silencing by RNA	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070370	cellular heat acclimation	IEA	AHRD
BP	GO:0071025	RNA surveillance	None	Extended
BP	GO:0071027	nuclear RNA surveillance	None	Extended
BP	GO:0071029	nuclear ncRNA surveillance	None	Extended
BP	GO:0071035	nuclear polyadenylation-dependent rRNA catabolic process	IEA	AHRD
BP	GO:0071046	nuclear polyadenylation-dependent ncRNA catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090305	nucleic acid phosphodiester bond hydrolysis	None	Extended
BP	GO:0090501	RNA phosphodiester bond hydrolysis	None	Extended
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	None	Extended
BP	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
BP	GO:0106354	tRNA surveillance	IEA	AHRD
BP	GO:0110154	RNA decapping	None	Extended
BP	GO:0110156	methylguanosine-cap decapping	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1900368	regulation of post-transcriptional gene silencing by RNA	None	Extended
BP	GO:1900369	negative regulation of post-transcriptional gene silencing by RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000001	mitochondrion inheritance	IEP	Predict GO terms from Neighborhoods
MF	GO:0000049	tRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000055	ribosomal large subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000056	ribosomal small subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000177	cytoplasmic exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000178	exosome (RNase complex)	IEP	Predict GO terms from Neighborhoods
MF	GO:0000287	magnesium ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000314	organellar small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
MF	GO:0000339	RNA cap binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0000340	RNA 7-methylguanosine cap binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0000447	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000472	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000480	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
CC	GO:0000785	chromatin	IEP	Predict GO terms from Neighborhoods
MF	GO:0001054	RNA polymerase I activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0001522	pseudouridine synthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001667	ameboidal-type cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0001755	neural crest cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0001837	epithelial to mesenchymal transition	IEP	Predict GO terms from Neighborhoods
MF	GO:0001882	nucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0002097	tRNA wobble base modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0002128	tRNA nucleoside ribose methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002926	tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002940	tRNA N2-guanine methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003724	RNA helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003727	single-stranded RNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004386	helicase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004826	phenylalanine-tRNA ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005049	nuclear export signal receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005634	nucleus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005642	annulate lamellae	IEP	Predict GO terms from Neighborhoods
CC	GO:0005643	nuclear pore	IEP	Predict GO terms from Neighborhoods
CC	GO:0005694	chromosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005736	RNA polymerase I complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0005763	mitochondrial small ribosomal subunit	IEP	Predict GO terms from Neighborhoods
CC	GO:0005816	spindle pole body	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0005977	glycogen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006112	energy reserve metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006351	DNA-templated transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006360	transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
BP	GO:0006369	termination of RNA polymerase II transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0006383	transcription by RNA polymerase III	IEP	Predict GO terms from Neighborhoods
BP	GO:0006400	tRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006405	RNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006406	mRNA export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0006415	translational termination	IEP	Predict GO terms from Neighborhoods
BP	GO:0006417	regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006432	phenylalanyl-tRNA aminoacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006913	nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006997	nucleus organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006999	nuclear pore organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007000	nucleolus organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007099	centriole replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0007566	embryo implantation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008033	tRNA processing	IEP	Predict GO terms from Neighborhoods
MF	GO:0008097	5S rRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008098	5S rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008168	methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008173	RNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008186	ATP-dependent activity, acting on RNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0008190	eukaryotic initiation factor 4E binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008428	ribonuclease inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008494	translation activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009303	rRNA transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0009328	phenylalanine-tRNA ligase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009451	RNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009561	megagametogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009894	regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009895	negative regulation of catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009965	leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0009982	pseudouridine synthase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010609	mRNA localization resulting in post-transcriptional regulation of gene expression	IEP	Predict GO terms from Neighborhoods
BP	GO:0010822	positive regulation of mitochondrion organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010824	regulation of centrosome duplication	IEP	Predict GO terms from Neighborhoods
BP	GO:0010928	regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0014029	neural crest formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016239	positive regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0017056	structural constituent of nuclear pore	IEP	Predict GO terms from Neighborhoods
MF	GO:0017070	U6 snRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0017126	nucleologenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0019843	rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030488	tRNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030619	U1 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030620	U2 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030621	U4 snRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0030623	U5 snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030686	90S preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0030687	preribosome, large subunit precursor	IEP	Predict GO terms from Neighborhoods
CC	GO:0030689	Noc complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030692	Noc4p-Nop14p complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030847	termination of RNA polymerase II transcription, exosome-dependent	IEP	Predict GO terms from Neighborhoods
CC	GO:0030880	RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030895	apolipoprotein B mRNA editing enzyme complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0031023	microtubule organizing center organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031080	nuclear pore outer ring	IEP	Predict GO terms from Neighborhoods
CC	GO:0031315	extrinsic component of mitochondrial outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0031329	regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031330	negative regulation of cellular catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031369	translation initiation factor binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031503	protein-containing complex localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031538	negative regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031590	wybutosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031591	wybutosine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031929	TOR signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0031965	nuclear membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032040	small-subunit processome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032069	regulation of nuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032074	negative regulation of nuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032259	methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0032549	ribonucleoside binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032790	ribosome disassembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0033588	elongator holoenzyme complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0033962	P-body assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034063	stress granule assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0034248	regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034250	positive regulation of cellular amide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034501	protein localization to kinetochore	IEP	Predict GO terms from Neighborhoods
BP	GO:0034504	protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0035265	organ growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0036477	somatodendritic compartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0038202	TORC1 signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0040019	positive regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042127	regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
MF	GO:0042134	rRNA primary transcript binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042273	ribosomal large subunit biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042790	nucleolar large rRNA transcription by RNA polymerase I	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043022	ribosome binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043024	ribosomal small subunit binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043412	macromolecule modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043414	macromolecule methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043487	regulation of RNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043488	regulation of mRNA stability	IEP	Predict GO terms from Neighborhoods
BP	GO:0043489	RNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043928	exonucleolytic catabolism of deadenylated mRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0045069	regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045070	positive regulation of viral genome replication	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045293	mRNA editing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045472	response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0045727	positive regulation of translation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045740	positive regulation of DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045947	negative regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045948	positive regulation of translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046605	regulation of centrosome cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046825	regulation of protein export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0046931	pore complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0048255	mRNA stabilization	IEP	Predict GO terms from Neighborhoods
BP	GO:0048308	organelle inheritance	IEP	Predict GO terms from Neighborhoods
BP	GO:0048311	mitochondrion distribution	IEP	Predict GO terms from Neighborhoods
BP	GO:0048530	fruit morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048762	mesenchymal cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0050657	nucleic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050658	RNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0050714	positive regulation of protein secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0050803	regulation of synapse structure or activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051028	mRNA transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051169	nuclear transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051223	regulation of protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051236	establishment of RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051246	regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051247	positive regulation of protein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051253	negative regulation of RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051290	protein heterotetramerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051292	nuclear pore complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051304	chromosome separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051306	mitotic sister chromatid separation	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051656	establishment of organelle localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0060698	endoribonuclease inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060699	regulation of endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060700	regulation of ribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060701	negative regulation of ribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0060702	negative regulation of endoribonuclease activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0061013	regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0061608	nuclear import signal receptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0062105	RNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0070201	regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070481	nuclear-transcribed mRNA catabolic process, non-stop decay	IEP	Predict GO terms from Neighborhoods
MF	GO:0070569	uridylyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071034	CUT catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071043	CUT metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0071362	cellular response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0071459	protein localization to chromosome, centromeric region	IEP	Predict GO terms from Neighborhoods
BP	GO:0072752	cellular response to rapamycin	IEP	Predict GO terms from Neighborhoods
BP	GO:0080178	5-carbamoylmethyl uridine residue modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0090296	regulation of mitochondrial DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090297	positive regulation of mitochondrial DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:0090497	mesenchymal cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0097747	RNA polymerase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098534	centriole assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0098781	ncRNA transcription	IEP	Predict GO terms from Neighborhoods
MF	GO:0106050	tRNA 2'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predict GO terms from Neighborhoods
MF	GO:0140142	nucleocytoplasmic carrier activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140513	nuclear protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0140535	intracellular protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0140721	nuclease inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900037	regulation of cellular response to hypoxia	IEP	Predict GO terms from Neighborhoods
BP	GO:1901355	response to rapamycin	IEP	Predict GO terms from Neighborhoods
BP	GO:1901655	cellular response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901858	regulation of mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901860	positive regulation of mitochondrial DNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902369	negative regulation of RNA catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902373	negative regulation of mRNA catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1902494	catalytic complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1903083	protein localization to condensed chromosome	IEP	Predict GO terms from Neighborhoods
BP	GO:1903311	regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903312	negative regulation of mRNA metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1905354	exoribonuclease complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1990417	snoRNA release from pre-rRNA	IEP	Predict GO terms from Neighborhoods
BP	GO:1990928	response to amino acid starvation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000024	regulation of leaf development	IEP	Predict GO terms from Neighborhoods
BP	GO:2000105	positive regulation of DNA-templated DNA replication	IEP	Predict GO terms from Neighborhoods
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR004859	Xrn1_N	1	253
IPR041412	Xrn1_helical	497	870
IPR041412	Xrn1_helical	327	435
IPR001878	Znf_CCHC	263	277
IPR036875	Znf_CCHC_sf	259	285

External Links

No external refs found!

SOLTUB.AGRIA.G00000041807

Expression Profile

Co-expression Networks

Functional Annotation