SOLTUB.AGRIA.G00000041969

Description : Protein TIC 55, chloroplastic

Gene families : OG_02_0021296 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041969
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_27

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004497	monooxygenase activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
BP	GO:0006066	alcohol metabolic process	None	Extended
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
BP	GO:0008203	cholesterol metabolic process	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009528	plastid inner membrane	None	Extended
CC	GO:0009579	thylakoid	IEA	AHRD
CC	GO:0009706	chloroplast inner membrane	IEA	AHRD
BP	GO:0009820	alkaloid metabolic process	None	Extended
BP	GO:0009822	alkaloid catabolic process	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010277	chlorophyllide a oxygenase [overall] activity	IEA	AHRD
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
CC	GO:0016021	integral component of membrane	IEA	AHRD
BP	GO:0016042	lipid catabolic process	IEA	AHRD
BP	GO:0016125	sterol metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	None	Extended
MF	GO:0016703	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	IEA	AHRD
BP	GO:0019439	aromatic compound catabolic process	IEA	AHRD
CC	GO:0019866	organelle inner membrane	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042221	response to chemical	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	IEA	AHRD
BP	GO:0045036	protein targeting to chloroplast	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	None	Extended
MF	GO:0051537	2 iron, 2 sulfur cluster binding	IEA	AHRD
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072596	establishment of protein localization to chloroplast	None	Extended
BP	GO:0072598	protein localization to chloroplast	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	IEA	AHRD
BP	GO:1901362	organic cyclic compound biosynthetic process	IEA	AHRD
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1902652	secondary alcohol metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004252	serine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005524	ATP binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005739	mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0006448	regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006612	protein targeting to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007005	mitochondrion organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008113	peptide-methionine (S)-S-oxide reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008236	serine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008728	GTP diphosphokinase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009368	endopeptidase Clp complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0009399	nitrogen fixation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009507	chloroplast	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009532	plastid stroma	IEP	Predict GO terms from Neighborhoods
CC	GO:0009535	chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0009536	plastid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0009570	chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0009643	photosynthetic acclimation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009657	plastid organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009658	chloroplast organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0009668	plastid membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0009842	cyanelle	IEP	Predict GO terms from Neighborhoods
MF	GO:0009977	proton motive force dependent protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010027	thylakoid membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0010109	regulation of photosynthesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010206	photosystem II repair	IEP	Predict GO terms from Neighborhoods
BP	GO:0010257	NADH dehydrogenase complex assembly	IEP	Predict GO terms from Neighborhoods
CC	GO:0010287	plastoglobule	IEP	Predict GO terms from Neighborhoods
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015970	guanosine tetraphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0015996	chlorophyll catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016226	iron-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0016715	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen	IEP	Predict GO terms from Neighborhoods
MF	GO:0016778	diphosphotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0017038	protein import	IEP	Predict GO terms from Neighborhoods
MF	GO:0017076	purine nucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0017171	serine hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030091	protein repair	IEP	Predict GO terms from Neighborhoods
MF	GO:0030554	adenyl nucleotide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031279	regulation of cyclase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031360	intrinsic component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031361	integral component of thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0031418	L-ascorbic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031978	plastid thylakoid lumen	IEP	Predict GO terms from Neighborhoods
MF	GO:0032553	ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032555	purine ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032977	membrane insertase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032981	mitochondrial respiratory chain complex I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033281	TAT protein transport complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033744	L-methionine:thioredoxin-disulfide S-oxidoreductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034036	purine ribonucleoside bisphosphate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034357	photosynthetic membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034599	cellular response to oxidative stress	IEP	Predict GO terms from Neighborhoods
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036094	small molecule binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0036456	L-methionine-(S)-S-oxide reductase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042549	photosystem II stabilization	IEP	Predict GO terms from Neighborhoods
CC	GO:0042651	thylakoid membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0043168	anion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0043235	receptor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0043953	protein transport by the Tat complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045037	protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:0045038	protein import into chloroplast thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0045900	negative regulation of translational elongation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046149	pigment catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048564	photosystem I assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0051291	protein heterooligomerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0052582	(+)-menthofuran synthase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0055035	plastid thylakoid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0055072	iron ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0055076	transition metal ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061024	membrane organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0062131	3-butenylglucosinolate 2-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0070206	protein trimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070208	protein heterotrimerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0070584	mitochondrion morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0070894	regulation of transposon integration	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080177	plastoglobule organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0080183	response to photooxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0090150	establishment of protein localization to membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090342	obsolete regulation of cell aging	IEP	Predict GO terms from Neighborhoods
MF	GO:0097367	carbohydrate derivative binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0097428	protein maturation by iron-sulfur cluster transfer	IEP	Predict GO terms from Neighborhoods
MF	GO:0102627	parthenolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102628	costunolide 3beta-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0106145	scopoletin 8-hydroxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0106147	fraxetin biosynthesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0140597	protein carrier chaperone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901031	regulation of response to reactive oxygen species	IEP	Predict GO terms from Neighborhoods
BP	GO:1901403	positive regulation of tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901465	positive regulation of tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901562	response to paraquat	IEP	Predict GO terms from Neighborhoods
BP	GO:1902171	regulation of tocopherol cyclase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902326	positive regulation of chlorophyll biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904143	positive regulation of carotenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1990229	iron-sulfur cluster assembly complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR017941	Rieske_2Fe-2S	93	178
IPR013626	PaO	302	388
IPR036922	Rieske_2Fe-2S_sf	88	208

External Links

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SOLTUB.AGRIA.G00000041969

Expression Profile

Co-expression Networks

Functional Annotation