SOLTUB.AGRIA.G00000041989

Description : Pectin lyase-like superfamily protein

Gene families : OG_02_0004244 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000041989
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_30

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009664	plant-type cell wall organization	None	Extended
BP	GO:0009827	plant-type cell wall modification	None	Extended
BP	GO:0009830	cell wall modification involved in abscission	IEA	AHRD
BP	GO:0009838	abscission	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009901	anther dehiscence	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010047	fruit dehiscence	IEA	AHRD
BP	GO:0010227	floral organ abscission	IEA	AHRD
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042545	cell wall modification	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044277	cell wall disassembly	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	IEA	AHRD
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002230	positive regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0002244	hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0004021	L-alanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004518	nuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004540	ribonuclease activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004795	threonine synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004838	L-tyrosine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0005997	xylulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006082	organic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006476	protein deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006505	GPI anchor metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006507	GPI anchor release	IEP	Predict GO terms from Neighborhoods
BP	GO:0006534	cysteine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006566	threonine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007411	axon guidance	IEP	Predict GO terms from Neighborhoods
BP	GO:0008045	motor neuron axon guidance	IEP	Predict GO terms from Neighborhoods
MF	GO:0008793	aromatic-amino-acid:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009088	threonine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009717	isoflavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009821	alkaloid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009952	anterior/posterior pattern specification	IEP	Predict GO terms from Neighborhoods
MF	GO:0010326	methionine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	IEP	Predict GO terms from Neighborhoods
BP	GO:0015691	cadmium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016575	histone deacetylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0016580	Sin3 complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0016752	sinapoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016753	O-sinapoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016754	sinapoylglucose-malate O-sinapoyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0017053	transcription repressor complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0018674	(S)-limonene 3-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0018675	(S)-limonene 6-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0019113	limonene monooxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019321	pentose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019344	cysteine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019748	secondary metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0021532	neural tube patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0021895	cerebral cortex neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0021953	central nervous system neuron differentiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
MF	GO:0030761	8-hydroxyquercitin 8-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0030766	11-O-demethyl-17-O-deacetylvindoline O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031012	extracellular matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0031937	obsolete positive regulation of chromatin silencing	IEP	Predict GO terms from Neighborhoods
CC	GO:0033644	host cell membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0033799	myricetin 3'-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0033800	isoflavone 7-O-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0035067	negative regulation of histone acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035601	protein deacylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0043392	negative regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043619	regulation of transcription from RNA polymerase II promoter in response to oxidative stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045666	positive regulation of neuron differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046287	isoflavonoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047312	L-phenylalanine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047635	alanine-oxo-acid transaminase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048225	suberin network	IEP	Predict GO terms from Neighborhoods
MF	GO:0050048	L-leucine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0050691	regulation of defense response to virus by host	IEP	Predict GO terms from Neighborhoods
BP	GO:0051238	sequestering of metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051595	response to methylglyoxal	IEP	Predict GO terms from Neighborhoods
MF	GO:0052793	pectin acetylesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055078	sodium ion homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0062150	amorpha-4,11-diene 12-monooxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070546	L-phenylalanine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070547	L-tyrosine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0070548	L-glutamine aminotransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070822	Sin3-type complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080098	L-tyrosine:pyruvate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080099	L-methionine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080100	L-glutamine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0085042	periarbuscular membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090090	negative regulation of canonical Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097485	neuron projection guidance	IEP	Predict GO terms from Neighborhoods
BP	GO:0098732	macromolecule deacylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0102170	5-epi-aristolochene-1,3-dihydroxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140416	transcription regulator inhibitor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0140678	molecular function inhibitor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1900181	negative regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901674	regulation of histone H3-K27 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901675	negative regulation of histone H3-K27 acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1902751	positive regulation of cell cycle G2/M phase transition	IEP	Predict GO terms from Neighborhoods
BP	GO:2000677	regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000678	negative regulation of transcription regulatory region DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:2000757	negative regulation of peptidyl-lysine acetylation	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024535	Pectate_lyase_SF_prot	22	68
IPR011050	Pectin_lyase_fold/virulence	3	66

External Links

No external refs found!

SOLTUB.AGRIA.G00000041989

Expression Profile

Co-expression Networks

Functional Annotation