SOLTUB.AGRIA.G00000042122


Description : Serine hydroxymethyltransferase


Gene families : OG_02_0011402 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000042122
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_26


Type GO Term Name Evidence Source
MF GO:0000900 mRNA regulatory element binding translation repressor activity IEA AHRD
BP GO:0002082 regulation of oxidative phosphorylation IEA AHRD
MF GO:0003682 chromatin binding IEA AHRD
MF GO:0004372 glycine hydroxymethyltransferase activity IEA AHRD
CC GO:0005743 mitochondrial inner membrane IEA AHRD
CC GO:0005758 mitochondrial intermembrane space IEA AHRD
CC GO:0005829 cytosol IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0006565 L-serine catabolic process IEA AHRD
BP GO:0007623 circadian rhythm IEA AHRD
MF GO:0008266 poly(U) RNA binding IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0008284 positive regulation of cell population proliferation IEA AHRD
BP GO:0009113 purine nucleobase biosynthetic process IEA AHRD
BP GO:0009409 response to cold IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
CC GO:0009534 chloroplast thylakoid IEA AHRD
BP GO:0009555 pollen development IEA AHRD
CC GO:0009570 chloroplast stroma IEA AHRD
BP GO:0009626 plant-type hypersensitive response IEA AHRD
BP GO:0009853 photorespiration IEA AHRD
BP GO:0010197 polar nucleus fusion IEA AHRD
CC GO:0015630 microtubule cytoskeleton IEA AHRD
BP GO:0019264 glycine biosynthetic process from serine IEA AHRD
MF GO:0030170 pyridoxal phosphate binding IEA AHRD
BP GO:0034340 response to type I interferon IEA AHRD
BP GO:0035999 tetrahydrofolate interconversion IEA AHRD
CC GO:0042645 mitochondrial nucleoid IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
BP GO:0044030 regulation of DNA methylation IEA AHRD
BP GO:0046500 S-adenosylmethionine metabolic process IEA AHRD
BP GO:0046655 folic acid metabolic process IEA AHRD
BP GO:0046686 response to cadmium ion IEA AHRD
MF GO:0048027 mRNA 5'-UTR binding IEA AHRD
CC GO:0048046 apoplast IEA AHRD
MF GO:0050897 cobalt ion binding IEA AHRD
BP GO:0051289 protein homotetramerization IEA AHRD
BP GO:0055063 sulfate ion homeostasis IEA AHRD
BP GO:0070129 regulation of mitochondrial translation IEA AHRD
BP GO:0070536 protein K63-linked deubiquitination IEA AHRD
CC GO:0070552 BRISC complex IEA AHRD
MF GO:0070905 serine binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0001843 neural tube closure IEP Predict GO terms from Neighborhoods
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004013 adenosylhomocysteinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP Predict GO terms from Neighborhoods
MF GO:0004024 alcohol dehydrogenase activity, zinc-dependent IEP Predict GO terms from Neighborhoods
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predict GO terms from Neighborhoods
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0006555 methionine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006558 L-phenylalanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006559 L-phenylalanine catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008168 methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008171 O-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008172 S-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008705 methionine synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0009066 aspartate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009074 aromatic amino acid family catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009086 methionine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009413 response to flooding IEP Predict GO terms from Neighborhoods
BP GO:0009698 phenylpropanoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009699 phenylpropanoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009743 response to carbohydrate IEP Predict GO terms from Neighborhoods
BP GO:0009800 cinnamic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009803 cinnamic acid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predict GO terms from Neighborhoods
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0016801 hydrolase activity, acting on ether bonds IEP Predict GO terms from Neighborhoods
MF GO:0016802 trialkylsulfonium hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016840 carbon-nitrogen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016841 ammonia-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP Predict GO terms from Neighborhoods
MF GO:0030599 pectinesterase activity IEP Predict GO terms from Neighborhoods
BP GO:0031000 response to caffeine IEP Predict GO terms from Neighborhoods
BP GO:0031507 heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:0032259 methylation IEP Predict GO terms from Neighborhoods
BP GO:0032355 response to estradiol IEP Predict GO terms from Neighborhoods
BP GO:0033353 S-adenosylmethionine cycle IEP Predict GO terms from Neighborhoods
BP GO:0035148 tube formation IEP Predict GO terms from Neighborhoods
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0042409 caffeoyl-CoA O-methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0043279 response to alkaloid IEP Predict GO terms from Neighborhoods
BP GO:0044272 sulfur compound biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0045548 phenylalanine ammonia-lyase activity IEP Predict GO terms from Neighborhoods
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Predict GO terms from Neighborhoods
BP GO:0046185 aldehyde catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046292 formaldehyde metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046294 formaldehyde catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046910 pectinesterase inhibitor activity IEP Predict GO terms from Neighborhoods
MF GO:0050660 flavin adenine dinucleotide binding IEP Predict GO terms from Neighborhoods
BP GO:0050667 homocysteine metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051903 S-(hydroxymethyl)glutathione dehydrogenase activity IEP Predict GO terms from Neighborhoods
BP GO:0060606 tube closure IEP Predict GO terms from Neighborhoods
BP GO:0070828 heterochromatin organization IEP Predict GO terms from Neighborhoods
BP GO:0070829 obsolete heterochromatin maintenance IEP Predict GO terms from Neighborhoods
MF GO:0071949 FAD binding IEP Predict GO terms from Neighborhoods
MF GO:0072341 modified amino acid binding IEP Predict GO terms from Neighborhoods
MF GO:0080076 caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0106312 methylenetetrahydrofolate reductase NADH activity IEP Predict GO terms from Neighborhoods
MF GO:0106313 methylenetetrahydrofolate reductase NADPH activity IEP Predict GO terms from Neighborhoods
BP GO:0110095 cellular detoxification of aldehyde IEP Predict GO terms from Neighborhoods
BP GO:0140718 facultative heterochromatin formation IEP Predict GO terms from Neighborhoods
BP GO:1900037 regulation of cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:1900039 positive regulation of cellular response to hypoxia IEP Predict GO terms from Neighborhoods
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1990110 callus formation IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 12 411
IPR015424 PyrdxlP-dep_Trfase 4 462
No external refs found!