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Description : Pentatricopeptide repeat-containing family protein
Gene families : OG_02_0012410 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004199 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0003002 | regionalization | None | Extended |
| MF | GO:0003674 | molecular_function | None | Extended |
| MF | GO:0003676 | nucleic acid binding | None | Extended |
| MF | GO:0003723 | RNA binding | None | Extended |
| MF | GO:0003729 | mRNA binding | IEA | AHRD |
| MF | GO:0003824 | catalytic activity | None | Extended |
| MF | GO:0004518 | nuclease activity | None | Extended |
| MF | GO:0004519 | endonuclease activity | IEA | AHRD |
| MF | GO:0005488 | binding | None | Extended |
| CC | GO:0005575 | cellular_component | None | Extended |
| CC | GO:0005739 | mitochondrion | IEA | AHRD |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | None | Extended |
| BP | GO:0006396 | RNA processing | IEA | AHRD |
| BP | GO:0006725 | cellular aromatic compound metabolic process | None | Extended |
| BP | GO:0006807 | nitrogen compound metabolic process | None | Extended |
| BP | GO:0006950 | response to stress | None | Extended |
| BP | GO:0006952 | defense response | None | Extended |
| BP | GO:0006970 | response to osmotic stress | None | Extended |
| BP | GO:0007389 | pattern specification process | None | Extended |
| BP | GO:0008150 | biological_process | None | Extended |
| BP | GO:0008152 | metabolic process | None | Extended |
| BP | GO:0009451 | RNA modification | None | Extended |
| CC | GO:0009507 | chloroplast | IEA | AHRD |
| CC | GO:0009536 | plastid | None | Extended |
| BP | GO:0009605 | response to external stimulus | None | Extended |
| BP | GO:0009607 | response to biotic stimulus | None | Extended |
| BP | GO:0009620 | response to fungus | None | Extended |
| BP | GO:0009628 | response to abiotic stimulus | None | Extended |
| BP | GO:0009651 | response to salt stress | IEA | AHRD |
| BP | GO:0009719 | response to endogenous stimulus | None | Extended |
| BP | GO:0009725 | response to hormone | None | Extended |
| BP | GO:0009737 | response to abscisic acid | IEA | AHRD |
| BP | GO:0009743 | response to carbohydrate | None | Extended |
| BP | GO:0009746 | response to hexose | None | Extended |
| BP | GO:0009749 | response to glucose | IEA | AHRD |
| BP | GO:0009888 | tissue development | None | Extended |
| BP | GO:0009987 | cellular process | None | Extended |
| BP | GO:0010033 | response to organic substance | None | Extended |
| BP | GO:0010051 | xylem and phloem pattern formation | None | Extended |
| BP | GO:0010087 | phloem or xylem histogenesis | IEA | AHRD |
| BP | GO:0010305 | leaf vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0010588 | cotyledon vascular tissue pattern formation | IEA | AHRD |
| BP | GO:0016070 | RNA metabolic process | None | Extended |
| BP | GO:0016071 | mRNA metabolic process | None | Extended |
| BP | GO:0016556 | mRNA modification | IEA | AHRD |
| MF | GO:0016787 | hydrolase activity | None | Extended |
| MF | GO:0016788 | hydrolase activity, acting on ester bonds | None | Extended |
| BP | GO:0022414 | reproductive process | None | Extended |
| BP | GO:0032501 | multicellular organismal process | None | Extended |
| BP | GO:0032502 | developmental process | None | Extended |
| BP | GO:0033993 | response to lipid | None | Extended |
| BP | GO:0034284 | response to monosaccharide | None | Extended |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | None | Extended |
| BP | GO:0042221 | response to chemical | None | Extended |
| BP | GO:0043170 | macromolecule metabolic process | None | Extended |
| BP | GO:0043207 | response to external biotic stimulus | None | Extended |
| CC | GO:0043226 | organelle | None | Extended |
| CC | GO:0043227 | membrane-bounded organelle | None | Extended |
| CC | GO:0043229 | intracellular organelle | None | Extended |
| CC | GO:0043231 | intracellular membrane-bounded organelle | None | Extended |
| BP | GO:0043412 | macromolecule modification | None | Extended |
| BP | GO:0044237 | cellular metabolic process | None | Extended |
| BP | GO:0044238 | primary metabolic process | None | Extended |
| BP | GO:0044419 | biological process involved in interspecies interaction between organisms | None | Extended |
| BP | GO:0046483 | heterocycle metabolic process | None | Extended |
| BP | GO:0048856 | anatomical structure development | None | Extended |
| BP | GO:0050832 | defense response to fungus | IEA | AHRD |
| BP | GO:0050896 | response to stimulus | None | Extended |
| BP | GO:0051707 | response to other organism | None | Extended |
| BP | GO:0071704 | organic substance metabolic process | None | Extended |
| BP | GO:0090304 | nucleic acid metabolic process | None | Extended |
| MF | GO:0097159 | organic cyclic compound binding | None | Extended |
| BP | GO:0097305 | response to alcohol | None | Extended |
| BP | GO:0098542 | defense response to other organism | None | Extended |
| CC | GO:0110165 | cellular anatomical entity | None | Extended |
| BP | GO:1900865 | chloroplast RNA modification | IEA | AHRD |
| BP | GO:1901360 | organic cyclic compound metabolic process | None | Extended |
| MF | GO:1901363 | heterocyclic compound binding | None | Extended |
| BP | GO:1901700 | response to oxygen-containing compound | None | Extended |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000959 | mitochondrial RNA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000963 | mitochondrial RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0003006 | developmental process involved in reproduction | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006084 | acetyl-CoA metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0008270 | zinc ion binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0009554 | megasporogenesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010014 | meristem initiation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010214 | seed coat development | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010467 | gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016553 | base conversion or substitution editing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016554 | cytidine to uridine editing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031425 | chloroplast RNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0031426 | polycistronic mRNA processing | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0034046 | poly(G) binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0043169 | cation binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0044030 | regulation of DNA methylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0046540 | U4/U6 x U5 tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046872 | metal ion binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0046914 | transition metal ion binding | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0070717 | poly-purine tract binding | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0080156 | mitochondrial mRNA modification | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090421 | embryonic meristem initiation | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097526 | spliceosomal tri-snRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140053 | mitochondrial gene expression | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0140547 | acquisition of seed longevity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:1900864 | mitochondrial RNA modification | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 175 | 203 |
| IPR002885 | Pentatricopeptide_repeat | 449 | 472 |
| IPR002885 | Pentatricopeptide_repeat | 247 | 273 |
| IPR002885 | Pentatricopeptide_repeat | 376 | 409 |
| IPR002885 | Pentatricopeptide_repeat | 248 | 273 |
| IPR002885 | Pentatricopeptide_repeat | 72 | 106 |
| IPR002885 | Pentatricopeptide_repeat | 45 | 72 |
| IPR002885 | Pentatricopeptide_repeat | 348 | 375 |
| IPR002885 | Pentatricopeptide_repeat | 448 | 472 |
| IPR002885 | Pentatricopeptide_repeat | 69 | 117 |
| IPR002885 | Pentatricopeptide_repeat | 373 | 421 |
| No external refs found! |
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