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  5. SOLTUB.AGRIA.G00000042756

SOLTUB.AGRIA.G00000042756


Description : Nucleic acid-binding, OB-fold


Gene families : OG_02_0000124 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000042756
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_17

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000005965 No alias Nucleic acid-binding, OB-fold 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005965 No alias Nucleic acid-binding, OB-fold 0.02 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000005965 No alias Nucleic acid-binding, OB-fold 0.02 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0005548 phospholipid transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0009413 response to flooding IEP Predict GO terms from Neighborhoods
BP GO:0009606 tropism IEP Predict GO terms from Neighborhoods
BP GO:0009629 response to gravity IEP Predict GO terms from Neighborhoods
BP GO:0009630 gravitropism IEP Predict GO terms from Neighborhoods
BP GO:0009639 response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:0009641 shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:0009683 indoleacetic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009684 indoleacetic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009850 auxin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009851 auxin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009914 hormone transport IEP Predict GO terms from Neighborhoods
BP GO:0009926 auxin polar transport IEP Predict GO terms from Neighborhoods
BP GO:0009958 positive gravitropism IEP Predict GO terms from Neighborhoods
BP GO:0010051 xylem and phloem pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0010074 maintenance of meristem identity IEP Predict GO terms from Neighborhoods
BP GO:0010078 maintenance of root meristem identity IEP Predict GO terms from Neighborhoods
MF GO:0010326 methionine-oxo-acid transaminase activity IEP Predict GO terms from Neighborhoods
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Predict GO terms from Neighborhoods
BP GO:0015914 phospholipid transport IEP Predict GO terms from Neighborhoods
BP GO:0016053 organic acid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predict GO terms from Neighborhoods
MF GO:0016846 carbon-sulfur lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0019842 vitamin binding IEP Predict GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0034754 cellular hormone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0035627 ceramide transport IEP Predict GO terms from Neighborhoods
BP GO:0042430 indole-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042435 indole-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042446 hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043562 cellular response to nitrogen levels IEP Predict GO terms from Neighborhoods
MF GO:0045544 gibberellin 20-oxidase activity IEP Predict GO terms from Neighborhoods
MF GO:0046624 sphingolipid transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0046625 sphingolipid binding IEP Predict GO terms from Neighborhoods
MF GO:0047312 L-phenylalanine:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0047635 alanine-oxo-acid transaminase activity IEP Predict GO terms from Neighborhoods
BP GO:0048438 floral whorl development IEP Predict GO terms from Neighborhoods
BP GO:0048467 gynoecium development IEP Predict GO terms from Neighborhoods
BP GO:0048527 lateral root development IEP Predict GO terms from Neighborhoods
BP GO:0048528 post-embryonic root development IEP Predict GO terms from Neighborhoods
BP GO:0048572 short-day photoperiodism IEP Predict GO terms from Neighborhoods
BP GO:0048575 short-day photoperiodism, flowering IEP Predict GO terms from Neighborhoods
MF GO:0050048 L-leucine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0050362 L-tryptophan:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0060918 auxin transport IEP Predict GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Predict GO terms from Neighborhoods
MF GO:0070529 L-tryptophan aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070546 L-phenylalanine aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070547 L-tyrosine aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0070548 L-glutamine aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0080022 primary root development IEP Predict GO terms from Neighborhoods
MF GO:0080097 L-tryptophan:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080098 L-tyrosine:pyruvate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080099 L-methionine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080100 L-glutamine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0090696 post-embryonic plant organ development IEP Predict GO terms from Neighborhoods
MF GO:0097001 ceramide binding IEP Predict GO terms from Neighborhoods
BP GO:0120009 intermembrane lipid transfer IEP Predict GO terms from Neighborhoods
MF GO:0120013 lipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120014 phospholipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120016 sphingolipid transfer activity IEP Predict GO terms from Neighborhoods
MF GO:0120017 ceramide transfer activity IEP Predict GO terms from Neighborhoods
MF GO:1902387 ceramide 1-phosphate binding IEP Predict GO terms from Neighborhoods
MF GO:1902388 ceramide 1-phosphate transfer activity IEP Predict GO terms from Neighborhoods
BP GO:1902389 ceramide 1-phosphate transport IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR012340 NA-bd_OB-fold 262 410
No external refs found!