SOLTUB.AGRIA.G00000004253


Description : Phytochrome interacting factor 3


Gene families : OG_02_0012431 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004253
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_122


Type GO Term Name Evidence Source
MF GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA AHRD
MF GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific IEA AHRD
CC GO:0005634 nucleus IEA AHRD
BP GO:0006357 regulation of transcription by RNA polymerase II IEA AHRD
BP GO:0006783 heme biosynthetic process IEA AHRD
BP GO:0007623 circadian rhythm IEA AHRD
BP GO:0009409 response to cold IEA AHRD
CC GO:0009506 plasmodesma IEA AHRD
BP GO:0009567 double fertilization forming a zygote and endosperm IEA AHRD
BP GO:0009585 red, far-red light phototransduction IEA AHRD
BP GO:0009638 phototropism IEA AHRD
BP GO:0009641 shade avoidance IEA AHRD
BP GO:0009693 ethylene biosynthetic process IEA AHRD
BP GO:0009704 de-etiolation IEA AHRD
BP GO:0009740 gibberellic acid mediated signaling pathway IEA AHRD
BP GO:0009742 brassinosteroid mediated signaling pathway IEA AHRD
BP GO:0009959 negative gravitropism IEA AHRD
BP GO:0010047 fruit dehiscence IEA AHRD
BP GO:0010100 negative regulation of photomorphogenesis IEA AHRD
BP GO:0010161 red light signaling pathway IEA AHRD
BP GO:0010187 negative regulation of seed germination IEA AHRD
BP GO:0010218 response to far red light IEA AHRD
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEA AHRD
MF GO:0010313 phytochrome binding IEA AHRD
BP GO:0010600 regulation of auxin biosynthetic process IEA AHRD
BP GO:0010928 regulation of auxin mediated signaling pathway IEA AHRD
BP GO:0015995 chlorophyll biosynthetic process IEA AHRD
BP GO:0031539 positive regulation of anthocyanin metabolic process IEA AHRD
BP GO:0042548 regulation of photosynthesis, light reaction IEA AHRD
MF GO:0042802 identical protein binding IEA AHRD
BP GO:0045893 positive regulation of DNA-templated transcription IEA AHRD
MF GO:0046983 protein dimerization activity IEA AHRD
BP GO:0048235 pollen sperm cell differentiation IEA AHRD
BP GO:0048440 carpel development IEA AHRD
BP GO:0048767 root hair elongation IEA AHRD
BP GO:0080006 internode patterning IEA AHRD
BP GO:0080113 regulation of seed growth IEA AHRD
BP GO:0090229 negative regulation of red or far-red light signaling pathway IEA AHRD
BP GO:1990110 callus formation IEA AHRD
MF GO:1990841 promoter-specific chromatin binding IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000281 mitotic cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0003824 catalytic activity IEP Predict GO terms from Neighborhoods
MF GO:0004058 aromatic-L-amino-acid decarboxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004467 long-chain fatty acid-CoA ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0004512 inositol-3-phosphate synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004837 tyrosine decarboxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0006020 inositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006021 inositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006558 L-phenylalanine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006559 L-phenylalanine catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006568 tryptophan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006576 cellular biogenic amine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006586 indolalkylamine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006587 serotonin biosynthetic process from tryptophan IEP Predict GO terms from Neighborhoods
BP GO:0006629 lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006643 membrane lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006658 phosphatidylserine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006659 phosphatidylserine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006664 glycolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006722 triterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007154 cell communication IEP Predict GO terms from Neighborhoods
BP GO:0007155 cell adhesion IEP Predict GO terms from Neighborhoods
MF GO:0008237 metallopeptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0008378 galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0008610 lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009063 cellular amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009074 aromatic amino acid family catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009247 glycolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009267 cellular response to starvation IEP Predict GO terms from Neighborhoods
CC GO:0009527 plastid outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0009631 cold acclimation IEP Predict GO terms from Neighborhoods
CC GO:0009707 chloroplast outer membrane IEP Predict GO terms from Neighborhoods
BP GO:0009877 nodulation IEP Predict GO terms from Neighborhoods
BP GO:0009991 response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0010025 wax biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010166 wax metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0015645 fatty acid ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0016036 cellular response to phosphate starvation IEP Predict GO terms from Neighborhoods
BP GO:0016125 sterol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016134 saponin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0016135 saponin biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0016405 CoA-ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016831 carboxy-lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016872 intramolecular lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predict GO terms from Neighborhoods
MF GO:0016878 acid-thiol ligase activity IEP Predict GO terms from Neighborhoods
BP GO:0019374 galactolipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019375 galactolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0019742 pentacyclic triterpenoid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019751 polyol metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0030170 pyridoxal phosphate binding IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0031350 intrinsic component of plastid membrane IEP Predict GO terms from Neighborhoods
CC GO:0031351 integral component of plastid membrane IEP Predict GO terms from Neighborhoods
CC GO:0031352 intrinsic component of plastid inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0031353 integral component of plastid inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0031356 intrinsic component of chloroplast inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0031357 integral component of chloroplast inner membrane IEP Predict GO terms from Neighborhoods
BP GO:0031407 oxylipin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031408 oxylipin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031589 cell-substrate adhesion IEP Predict GO terms from Neighborhoods
BP GO:0031667 response to nutrient levels IEP Predict GO terms from Neighborhoods
BP GO:0031668 cellular response to extracellular stimulus IEP Predict GO terms from Neighborhoods
BP GO:0031669 cellular response to nutrient levels IEP Predict GO terms from Neighborhoods
CC GO:0031969 chloroplast membrane IEP Predict GO terms from Neighborhoods
BP GO:0032958 inositol phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0033517 myo-inositol hexakisphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033554 cellular response to stress IEP Predict GO terms from Neighborhoods
MF GO:0035250 UDP-galactosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0035835 indole alkaloid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0036203 taxoid 14-beta-hydroxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0036239 taxoid 7beta-hydroxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0036467 5-hydroxy-L-tryptophan decarboxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0036468 L-dopa decarboxylase activity IEP Predict GO terms from Neighborhoods
MF GO:0036469 L-tryptophan decarboxylase activity IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042427 serotonin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0042428 serotonin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0042550 photosystem I stabilization IEP Predict GO terms from Neighborhoods
BP GO:0042594 response to starvation IEP Predict GO terms from Neighborhoods
BP GO:0043647 inositol phosphate metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043661 peribacteroid membrane IEP Predict GO terms from Neighborhoods
BP GO:0044106 cellular amine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044238 primary metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044255 cellular lipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044550 secondary metabolite biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045017 glycerolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046173 polyol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046189 phenol-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046467 membrane lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0046481 digalactosyldiacylglycerol synthase activity IEP Predict GO terms from Neighborhoods
BP GO:0046486 glycerolipid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0048444 floral organ morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0048446 petal morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0061640 cytoskeleton-dependent cytokinesis IEP Predict GO terms from Neighborhoods
MF GO:0070279 vitamin B6 binding IEP Predict GO terms from Neighborhoods
BP GO:0071496 cellular response to external stimulus IEP Predict GO terms from Neighborhoods
BP GO:0097164 ammonium ion metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901160 primary amino compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901162 primary amino compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901568 fatty acid derivative metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901570 fatty acid derivative biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901606 alpha-amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901615 organic hydroxy compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901695 tyramine biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902222 erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903509 liposaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903725 regulation of phospholipid metabolic process IEP Predict GO terms from Neighborhoods
MF GO:1990055 phenylacetaldehyde synthase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR036638 HLH_DNA-bd_sf 455 520
IPR011598 bHLH_dom 462 508
No external refs found!