Coexpression cluster: Cluster_122 (HCCA Clusters (HRR 50 & PCC 0.5))

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0019752 carboxylic acid metabolic process 20.0% (33/165) 1.79 0.0 1e-06
GO:0044255 cellular lipid metabolic process 19.39% (32/165) 1.66 0.0 5e-06
GO:0043436 oxoacid metabolic process 20.61% (34/165) 1.6 0.0 6e-06
GO:0071704 organic substance metabolic process 58.79% (97/165) 0.67 0.0 7e-06
GO:0006082 organic acid metabolic process 20.61% (34/165) 1.52 0.0 9e-06
GO:0006629 lipid metabolic process 21.21% (35/165) 1.5 0.0 9e-06
GO:0044281 small molecule metabolic process 24.24% (40/165) 1.31 0.0 1.9e-05
GO:0044283 small molecule biosynthetic process 14.55% (24/165) 1.83 0.0 2.4e-05
GO:0008152 metabolic process 60.0% (99/165) 0.59 0.0 3.1e-05
GO:0044237 cellular metabolic process 53.33% (88/165) 0.65 0.0 5.4e-05
GO:0046394 carboxylic acid biosynthetic process 11.52% (19/165) 1.99 0.0 7.4e-05
GO:1901576 organic substance biosynthetic process 30.3% (50/165) 1.03 0.0 7.9e-05
GO:0009987 cellular process 70.91% (117/165) 0.44 1e-06 0.000128
GO:0009058 biosynthetic process 30.91% (51/165) 0.98 1e-06 0.000137
GO:0044249 cellular biosynthetic process 28.48% (47/165) 1.02 1e-06 0.000164
GO:0110165 cellular anatomical entity 77.58% (128/165) 0.37 2e-06 0.000217
GO:0016020 membrane 45.45% (75/165) 0.69 2e-06 0.000219
GO:0003824 catalytic activity 50.91% (84/165) 0.63 1e-06 0.000229
GO:0016053 organic acid biosynthetic process 11.52% (19/165) 1.85 2e-06 0.000229
GO:0016833 oxo-acid-lyase activity 2.42% (4/165) 5.3 3e-06 0.000377
GO:0005575 cellular_component 77.58% (128/165) 0.35 4e-06 0.000525
GO:0031969 chloroplast membrane 6.06% (10/165) 2.66 5e-06 0.00054
GO:0006520 cellular amino acid metabolic process 8.48% (14/165) 2.11 5e-06 0.000585
GO:0008610 lipid biosynthetic process 13.33% (22/165) 1.51 1e-05 0.001004
GO:0009532 plastid stroma 9.09% (15/165) 1.93 1.1e-05 0.001055
GO:0004049 anthranilate synthase activity 1.82% (3/165) 6.01 1.2e-05 0.001091
GO:0005950 anthranilate synthase complex 1.82% (3/165) 6.01 1.2e-05 0.001091
GO:0032441 pheophorbide a oxygenase activity 1.21% (2/165) 7.89 1.8e-05 0.001568
GO:0006787 porphyrin-containing compound catabolic process 2.42% (4/165) 4.5 3e-05 0.002205
GO:0033015 tetrapyrrole catabolic process 2.42% (4/165) 4.5 3e-05 0.002205
GO:0046149 pigment catabolic process 2.42% (4/165) 4.5 3e-05 0.002205
GO:0032787 monocarboxylic acid metabolic process 11.52% (19/165) 1.54 3.3e-05 0.002318
GO:0015996 chlorophyll catabolic process 2.42% (4/165) 4.53 2.7e-05 0.002346
GO:1901605 alpha-amino acid metabolic process 6.67% (11/165) 2.22 2.9e-05 0.002365
GO:0009570 chloroplast stroma 8.48% (14/165) 1.89 3e-05 0.002395
GO:0008150 biological_process 76.36% (126/165) 0.31 3.7e-05 0.002524
GO:0004659 prenyltransferase activity 2.42% (4/165) 4.27 5.6e-05 0.003747
GO:0019637 organophosphate metabolic process 9.7% (16/165) 1.61 8.2e-05 0.005381
GO:0015994 chlorophyll metabolic process 3.03% (5/165) 3.47 9.5e-05 0.006022
GO:0018130 heterocycle biosynthetic process 11.52% (19/165) 1.34 0.000187 0.011596
GO:1901135 carbohydrate derivative metabolic process 11.52% (19/165) 1.34 0.000198 0.011977
GO:1901564 organonitrogen compound metabolic process 33.94% (56/165) 0.64 0.000214 0.012603
GO:0031090 organelle membrane 23.03% (38/165) 0.84 0.000219 0.012621
GO:1901362 organic cyclic compound biosynthetic process 15.15% (25/165) 1.09 0.000266 0.013748
GO:0010277 chlorophyllide a oxygenase [overall] activity 1.21% (2/165) 6.3 0.000263 0.013858
GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) 1.21% (2/165) 6.3 0.000263 0.013858
GO:0042170 plastid membrane 7.27% (12/165) 1.76 0.000253 0.013953
GO:0051536 iron-sulfur cluster binding 3.64% (6/165) 2.75 0.000289 0.014045
GO:0051540 metal cluster binding 3.64% (6/165) 2.75 0.000289 0.014045
GO:0009579 thylakoid 4.24% (7/165) 2.51 0.000252 0.014178
GO:0006081 cellular aldehyde metabolic process 3.64% (6/165) 2.76 0.000282 0.014252
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups 4.85% (8/165) 2.24 0.000324 0.015158
GO:0044238 primary metabolic process 44.85% (74/165) 0.49 0.000319 0.015224
GO:0003674 molecular_function 72.73% (120/165) 0.28 0.000337 0.015449
GO:0033013 tetrapyrrole metabolic process 3.03% (5/165) 3.04 0.000378 0.016165
GO:0010600 regulation of auxin biosynthetic process 2.42% (4/165) 3.58 0.000359 0.016204
GO:0006778 porphyrin-containing compound metabolic process 3.03% (5/165) 3.05 0.000366 0.016216
GO:1901137 carbohydrate derivative biosynthetic process 7.27% (12/165) 1.7 0.000373 0.016222
GO:0009706 chloroplast inner membrane 3.03% (5/165) 3.03 0.00039 0.016404
GO:0031408 oxylipin biosynthetic process 2.42% (4/165) 3.53 0.000414 0.017122
GO:0031407 oxylipin metabolic process 2.42% (4/165) 3.48 0.000475 0.019306
GO:0006664 glycolipid metabolic process 2.42% (4/165) 3.35 0.000667 0.02626
GO:0042440 pigment metabolic process 4.85% (8/165) 2.08 0.000661 0.026447
GO:0009528 plastid inner membrane 3.03% (5/165) 2.83 0.000741 0.028716
GO:0009309 amine biosynthetic process 2.42% (4/165) 3.27 0.000812 0.030509
GO:0042401 cellular biogenic amine biosynthetic process 2.42% (4/165) 3.27 0.000812 0.030509
GO:1903509 liposaccharide metabolic process 2.42% (4/165) 3.24 0.000876 0.032412
GO:0004743 pyruvate kinase activity 1.21% (2/165) 5.43 0.00095 0.033645
GO:0050267 rubber cis-polyprenylcistransferase activity 1.21% (2/165) 5.43 0.00095 0.033645
GO:0006720 isoprenoid metabolic process 7.88% (13/165) 1.47 0.000935 0.034074
GO:0004888 transmembrane signaling receptor activity 4.24% (7/165) 2.18 0.000994 0.034702
GO:0048041 focal adhesion assembly 1.21% (2/165) 5.3 0.001137 0.036602
GO:0045547 dehydrodolichyl diphosphate synthase activity 1.21% (2/165) 5.3 0.001137 0.036602
GO:0046488 phosphatidylinositol metabolic process 2.42% (4/165) 3.15 0.001127 0.037247
GO:0006644 phospholipid metabolic process 4.85% (8/165) 1.97 0.001117 0.037405
GO:1901806 beta-glucoside biosynthetic process 1.82% (3/165) 3.86 0.00118 0.037502
GO:0005782 peroxisomal matrix 1.82% (3/165) 3.89 0.001111 0.037733
GO:0031907 microbody lumen 1.82% (3/165) 3.89 0.001111 0.037733
GO:1901360 organic cyclic compound metabolic process 26.06% (43/165) 0.66 0.001208 0.03792
GO:0005778 peroxisomal membrane 2.42% (4/165) 3.11 0.001248 0.038206
GO:0031903 microbody membrane 2.42% (4/165) 3.11 0.001248 0.038206
GO:1901615 organic hydroxy compound metabolic process 7.88% (13/165) 1.41 0.001365 0.040756
GO:0055085 transmembrane transport 9.7% (16/165) 1.24 0.001358 0.041068
GO:0006643 membrane lipid metabolic process 3.03% (5/165) 2.62 0.001412 0.041664
GO:0006796 phosphate-containing compound metabolic process 15.76% (26/165) 0.9 0.001447 0.042195
GO:0051539 4 iron, 4 sulfur cluster binding 2.42% (4/165) 3.03 0.001518 0.043767
GO:0019408 dolichol biosynthetic process 1.21% (2/165) 5.08 0.001559 0.044419
GO:0008652 cellular amino acid biosynthetic process 4.24% (7/165) 2.04 0.001696 0.047788
GO:0001614 purinergic nucleotide receptor activity 1.21% (2/165) 4.98 0.001794 0.047813
GO:0016502 nucleotide receptor activity 1.21% (2/165) 4.98 0.001794 0.047813
GO:0045028 G protein-coupled purinergic nucleotide receptor activity 1.21% (2/165) 4.98 0.001794 0.047813
GO:0019348 dolichol metabolic process 1.21% (2/165) 4.98 0.001794 0.047813
GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors 1.21% (2/165) 4.98 0.001794 0.047813
GO:0006793 phosphorus metabolic process 15.76% (26/165) 0.88 0.00184 0.048536
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_144 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_245 0.011 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_249 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_19 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_97 0.008 Orthogroups with 8 Potato genotypes Compare
Sequences (165) (download table)

InterPro Domains

GO Terms

Family Terms