SOLTUB.AGRIA.G00000043905


Description : 50S ribosomal protein L16, chloroplastic


Gene families : OG_02_0001154 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000043905
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_109


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predict GO terms from Neighborhoods
CC GO:0000315 organellar large ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0001882 nucleoside binding IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Predict GO terms from Neighborhoods
CC GO:0005762 mitochondrial large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0006091 generation of precursor metabolites and energy IEP Predict GO terms from Neighborhoods
BP GO:0006354 DNA-templated transcription elongation IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0009055 electron transfer activity IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009295 nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0009521 photosystem IEP Predict GO terms from Neighborhoods
CC GO:0009522 photosystem I IEP Predict GO terms from Neighborhoods
CC GO:0009535 chloroplast thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0009575 chromoplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009853 photorespiration IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
BP GO:0015979 photosynthesis IEP Predict GO terms from Neighborhoods
MF GO:0016168 chlorophyll binding IEP Predict GO terms from Neighborhoods
MF GO:0016491 oxidoreductase activity IEP Predict GO terms from Neighborhoods
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Predict GO terms from Neighborhoods
BP GO:0018298 obsolete protein-chromophore linkage IEP Predict GO terms from Neighborhoods
BP GO:0019253 reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:0019684 photosynthesis, light reaction IEP Predict GO terms from Neighborhoods
BP GO:0019685 photosynthesis, dark reaction IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022900 electron transport chain IEP Predict GO terms from Neighborhoods
CC GO:0031360 intrinsic component of thylakoid membrane IEP Predict GO terms from Neighborhoods
CC GO:0031361 integral component of thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0032549 ribonucleoside binding IEP Predict GO terms from Neighborhoods
CC GO:0034357 photosynthetic membrane IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0042170 plastid membrane IEP Predict GO terms from Neighborhoods
CC GO:0042644 chloroplast nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042646 plastid nucleoid IEP Predict GO terms from Neighborhoods
CC GO:0042651 thylakoid membrane IEP Predict GO terms from Neighborhoods
BP GO:0042773 ATP synthesis coupled electron transport IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0046906 tetrapyrrole binding IEP Predict GO terms from Neighborhoods
MF GO:0048038 quinone binding IEP Predict GO terms from Neighborhoods
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predict GO terms from Neighborhoods
MF GO:0051536 iron-sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predict GO terms from Neighborhoods
MF GO:0051540 metal cluster binding IEP Predict GO terms from Neighborhoods
CC GO:0055035 plastid thylakoid membrane IEP Predict GO terms from Neighborhoods
MF GO:0070180 large ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 94 222
IPR000114 Ribosomal_L16 92 217
IPR036920 Ribosomal_L10e/L16_sf 92 223
No external refs found!