SOLTUB.AGRIA.G00000044057


Description : Pentatricopeptide repeat-containing protein, putative


Gene families : OG_02_0009097 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000044057
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_176


Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006725 cellular aromatic compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0016070 RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046483 heterocycle metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090304 nucleic acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
BP GO:1901360 organic cyclic compound metabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 376 400
IPR002885 Pentatricopeptide_repeat 419 445
IPR002885 Pentatricopeptide_repeat 592 641
IPR002885 Pentatricopeptide_repeat 312 357
IPR002885 Pentatricopeptide_repeat 663 711
IPR002885 Pentatricopeptide_repeat 454 500
IPR002885 Pentatricopeptide_repeat 523 571
IPR002885 Pentatricopeptide_repeat 735 779
IPR002885 Pentatricopeptide_repeat 176 208
IPR002885 Pentatricopeptide_repeat 700 729
IPR002885 Pentatricopeptide_repeat 455 488
IPR002885 Pentatricopeptide_repeat 630 656
IPR002885 Pentatricopeptide_repeat 528 558
IPR002885 Pentatricopeptide_repeat 278 312
IPR002885 Pentatricopeptide_repeat 313 346
IPR002885 Pentatricopeptide_repeat 561 593
IPR002885 Pentatricopeptide_repeat 735 766
IPR002885 Pentatricopeptide_repeat 596 628
IPR002885 Pentatricopeptide_repeat 423 453
IPR002885 Pentatricopeptide_repeat 666 698
IPR002885 Pentatricopeptide_repeat 176 205
IPR002885 Pentatricopeptide_repeat 278 308
No external refs found!