SOLTUB.AGRIA.G00000004395


Description : Zinc finger CCCH domain protein


Gene families : OG_02_0005432 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004395
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_39


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005737 cytoplasm IEA AHRD
BP GO:0010604 positive regulation of macromolecule metabolic process IEA AHRD
MF GO:0018024 histone-lysine N-methyltransferase activity IEA AHRD
BP GO:0033044 regulation of chromosome organization IEA AHRD
BP GO:0034968 histone lysine methylation IEA AHRD
BP GO:0045892 negative regulation of DNA-templated transcription IEA AHRD
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEA AHRD
BP GO:0048583 regulation of response to stimulus IEA AHRD
BP GO:0051052 regulation of DNA metabolic process IEA AHRD
BP GO:0060413 atrial septum morphogenesis IEA AHRD
BP GO:1902275 regulation of chromatin organization IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0000255 allantoin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000256 allantoin catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0000781 chromosome, telomeric region IEP Predict GO terms from Neighborhoods
BP GO:0000904 cell morphogenesis involved in differentiation IEP Predict GO terms from Neighborhoods
BP GO:0001649 osteoblast differentiation IEP Predict GO terms from Neighborhoods
BP GO:0001936 regulation of endothelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0001938 positive regulation of endothelial cell proliferation IEP Predict GO terms from Neighborhoods
MF GO:0003714 transcription corepressor activity IEP Predict GO terms from Neighborhoods
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0004407 histone deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0004848 ureidoglycolate hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding IEP Predict GO terms from Neighborhoods
CC GO:0005731 nucleolus organizer region IEP Predict GO terms from Neighborhoods
BP GO:0006109 regulation of carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006110 regulation of glycolytic process IEP Predict GO terms from Neighborhoods
BP GO:0006111 regulation of gluconeogenesis IEP Predict GO terms from Neighborhoods
BP GO:0006140 regulation of nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006144 purine nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006145 purine nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006282 regulation of DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006356 regulation of transcription by RNA polymerase I IEP Predict GO terms from Neighborhoods
BP GO:0006471 protein ADP-ribosylation IEP Predict GO terms from Neighborhoods
BP GO:0006476 protein deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0006521 regulation of cellular amino acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007072 positive regulation of transcription involved in exit from mitosis IEP Predict GO terms from Neighborhoods
BP GO:0007129 homologous chromosome pairing at meiosis IEP Predict GO terms from Neighborhoods
BP GO:0008340 determination of adult lifespan IEP Predict GO terms from Neighborhoods
BP GO:0009112 nucleobase metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009251 glucan catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009269 response to desiccation IEP Predict GO terms from Neighborhoods
BP GO:0009609 response to symbiotic bacterium IEP Predict GO terms from Neighborhoods
BP GO:0009631 cold acclimation IEP Predict GO terms from Neighborhoods
BP GO:0009638 phototropism IEP Predict GO terms from Neighborhoods
BP GO:0009718 anthocyanin-containing compound biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009793 embryo development ending in seed dormancy IEP Predict GO terms from Neighborhoods
MF GO:0009881 photoreceptor activity IEP Predict GO terms from Neighborhoods
MF GO:0009882 blue light photoreceptor activity IEP Predict GO terms from Neighborhoods
CC GO:0009897 external side of plasma membrane IEP Predict GO terms from Neighborhoods
CC GO:0009925 basal plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0009958 positive gravitropism IEP Predict GO terms from Neighborhoods
BP GO:0009960 endosperm development IEP Predict GO terms from Neighborhoods
BP GO:0009963 positive regulation of flavonoid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010037 response to carbon dioxide IEP Predict GO terms from Neighborhoods
BP GO:0010090 trichome morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010101 post-embryonic root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010102 lateral root morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010103 stomatal complex morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010135 ureide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010136 ureide catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0010181 FMN binding IEP Predict GO terms from Neighborhoods
MF GO:0010314 phosphatidylinositol-5-phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0010359 regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0010360 negative regulation of anion channel activity IEP Predict GO terms from Neighborhoods
BP GO:0010361 regulation of anion channel activity by blue light IEP Predict GO terms from Neighborhoods
BP GO:0010362 negative regulation of anion channel activity by blue light IEP Predict GO terms from Neighborhoods
BP GO:0010374 stomatal complex development IEP Predict GO terms from Neighborhoods
BP GO:0010528 regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010529 negative regulation of transposition IEP Predict GO terms from Neighborhoods
BP GO:0010540 basipetal auxin transport IEP Predict GO terms from Neighborhoods
BP GO:0010569 regulation of double-strand break repair via homologous recombination IEP Predict GO terms from Neighborhoods
BP GO:0010677 negative regulation of cellular carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010821 regulation of mitochondrion organization IEP Predict GO terms from Neighborhoods
BP GO:0010827 regulation of glucose transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0010829 negative regulation of glucose transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0010906 regulation of glucose metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0015926 glucosidase activity IEP Predict GO terms from Neighborhoods
BP GO:0016575 histone deacetylation IEP Predict GO terms from Neighborhoods
MF GO:0016763 pentosyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0016787 hydrolase activity IEP Predict GO terms from Neighborhoods
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predict GO terms from Neighborhoods
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predict GO terms from Neighborhoods
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Predict GO terms from Neighborhoods
BP GO:0016998 cell wall macromolecule catabolic process IEP Predict GO terms from Neighborhoods
MF GO:0017136 NAD-dependent histone deacetylase activity IEP Predict GO terms from Neighborhoods
BP GO:0018364 peptidyl-glutamine methylation IEP Predict GO terms from Neighborhoods
MF GO:0019213 deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Predict GO terms from Neighborhoods
MF GO:0030145 manganese ion binding IEP Predict GO terms from Neighborhoods
CC GO:0030874 nucleolar chromatin IEP Predict GO terms from Neighborhoods
BP GO:0031397 negative regulation of protein ubiquitination IEP Predict GO terms from Neighborhoods
MF GO:0031490 chromatin DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031648 protein destabilization IEP Predict GO terms from Neighborhoods
BP GO:0031940 obsolete positive regulation of chromatin silencing at telomere IEP Predict GO terms from Neighborhoods
MF GO:0032129 histone deacetylase activity (H3-K9 specific) IEP Predict GO terms from Neighborhoods
BP GO:0032204 regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
MF GO:0032266 phosphatidylinositol-3-phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0032410 negative regulation of transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032413 negative regulation of ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0032878 regulation of establishment or maintenance of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:0033157 regulation of intracellular protein transport IEP Predict GO terms from Neighborhoods
BP GO:0033198 response to ATP IEP Predict GO terms from Neighborhoods
BP GO:0033238 regulation of cellular amine metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0033500 carbohydrate homeostasis IEP Predict GO terms from Neighborhoods
MF GO:0033558 protein lysine deacetylase activity IEP Predict GO terms from Neighborhoods
MF GO:0034739 histone deacetylase activity (H4-K16 specific) IEP Predict GO terms from Neighborhoods
BP GO:0034762 regulation of transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034763 negative regulation of transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:0034766 negative regulation of ion transmembrane transport IEP Predict GO terms from Neighborhoods
MF GO:0034979 NAD-dependent protein deacetylase activity IEP Predict GO terms from Neighborhoods
BP GO:0035601 protein deacylation IEP Predict GO terms from Neighborhoods
CC GO:0035861 site of double-strand break IEP Predict GO terms from Neighborhoods
BP GO:0036048 protein desuccinylation IEP Predict GO terms from Neighborhoods
BP GO:0036049 peptidyl-lysine desuccinylation IEP Predict GO terms from Neighborhoods
MF GO:0036055 protein-succinyllysine desuccinylase activity IEP Predict GO terms from Neighborhoods
BP GO:0042127 regulation of cell population proliferation IEP Predict GO terms from Neighborhoods
BP GO:0042326 negative regulation of phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0042593 glucose homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0043171 peptide catabolic process IEP Predict GO terms from Neighborhoods
CC GO:0043226 organelle IEP Predict GO terms from Neighborhoods
CC GO:0043229 intracellular organelle IEP Predict GO terms from Neighborhoods
BP GO:0043271 negative regulation of ion transport IEP Predict GO terms from Neighborhoods
MF GO:0043425 bHLH transcription factor binding IEP Predict GO terms from Neighborhoods
BP GO:0043470 regulation of carbohydrate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043605 cellular amide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress IEP Predict GO terms from Neighborhoods
BP GO:0043620 regulation of DNA-templated transcription in response to stress IEP Predict GO terms from Neighborhoods
BP GO:0043966 histone H3 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0043970 histone H3-K9 acetylation IEP Predict GO terms from Neighborhoods
BP GO:0044248 cellular catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044347 cell wall polysaccharide catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045765 regulation of angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045766 positive regulation of angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0045820 negative regulation of glycolytic process IEP Predict GO terms from Neighborhoods
BP GO:0045912 negative regulation of carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045980 negative regulation of nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046113 nucleobase catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046283 anthocyanin-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046324 regulation of glucose import IEP Predict GO terms from Neighborhoods
BP GO:0046325 negative regulation of glucose import IEP Predict GO terms from Neighborhoods
BP GO:0046683 response to organophosphorus IEP Predict GO terms from Neighborhoods
BP GO:0046822 regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046825 regulation of protein export from nucleus IEP Predict GO terms from Neighborhoods
MF GO:0046969 NAD-dependent histone deacetylase activity (H3-K9 specific) IEP Predict GO terms from Neighborhoods
BP GO:0048145 regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048146 positive regulation of fibroblast proliferation IEP Predict GO terms from Neighborhoods
BP GO:0048608 reproductive structure development IEP Predict GO terms from Neighborhoods
BP GO:0048766 root hair initiation IEP Predict GO terms from Neighborhoods
MF GO:0050538 N-carbamoyl-L-amino-acid hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0050678 regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0050679 positive regulation of epithelial cell proliferation IEP Predict GO terms from Neighborhoods
MF GO:0050897 cobalt ion binding IEP Predict GO terms from Neighborhoods
BP GO:0051051 negative regulation of transport IEP Predict GO terms from Neighborhoods
BP GO:0051262 protein tetramerization IEP Predict GO terms from Neighborhoods
MF GO:0051287 NAD binding IEP Predict GO terms from Neighborhoods
BP GO:0051289 protein homotetramerization IEP Predict GO terms from Neighborhoods
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Predict GO terms from Neighborhoods
BP GO:0061647 histone H3-K9 modification IEP Predict GO terms from Neighborhoods
MF GO:0061697 protein-glutaryllysine deglutarylase activity IEP Predict GO terms from Neighborhoods
BP GO:0061698 protein deglutarylation IEP Predict GO terms from Neighborhoods
BP GO:0062012 regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0062014 negative regulation of small molecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0062075 pollen aperture formation IEP Predict GO terms from Neighborhoods
BP GO:0062176 R-loop disassembly IEP Predict GO terms from Neighborhoods
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0070273 phosphatidylinositol-4-phosphate binding IEP Predict GO terms from Neighborhoods
MF GO:0070300 phosphatidic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0070403 NAD+ binding IEP Predict GO terms from Neighborhoods
BP GO:0070932 histone H3 deacetylation IEP Predict GO terms from Neighborhoods
BP GO:0071318 cellular response to ATP IEP Predict GO terms from Neighborhoods
BP GO:0072091 regulation of stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:0072523 purine-containing compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080001 mucilage extrusion from seed coat IEP Predict GO terms from Neighborhoods
MF GO:0080025 phosphatidylinositol-3,5-bisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0090357 regulation of tryptophan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090558 plant epidermis development IEP Predict GO terms from Neighborhoods
BP GO:0090626 plant epidermis morphogenesis IEP Predict GO terms from Neighborhoods
CC GO:0090734 site of DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0097264 self proteolysis IEP Predict GO terms from Neighborhoods
MF GO:0097372 NAD-dependent histone deacetylase activity (H3-K18 specific) IEP Predict GO terms from Neighborhoods
BP GO:0098732 macromolecule deacylation IEP Predict GO terms from Neighborhoods
CC GO:0099115 chromosome, subtelomeric region IEP Predict GO terms from Neighborhoods
BP GO:0106167 extracellular ATP signaling IEP Predict GO terms from Neighborhoods
BP GO:0106230 protein depropionylation IEP Predict GO terms from Neighborhoods
MF GO:0106231 protein-propionyllysine depropionylase activity IEP Predict GO terms from Neighborhoods
BP GO:0120161 regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:0120162 positive regulation of cold-induced thermogenesis IEP Predict GO terms from Neighborhoods
BP GO:0140747 regulation of ncRNA transcription IEP Predict GO terms from Neighborhoods
BP GO:1900367 positive regulation of defense response to insect IEP Predict GO terms from Neighborhoods
BP GO:1900542 regulation of purine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1900543 negative regulation of purine nucleotide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901342 regulation of vasculature development IEP Predict GO terms from Neighborhoods
BP GO:1901483 regulation of transcription factor catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901485 positive regulation of transcription factor catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901565 organonitrogen compound catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901575 organic substance catabolic process IEP Predict GO terms from Neighborhoods
BP GO:1901836 regulation of transcription of nucleolar large rRNA by RNA polymerase I IEP Predict GO terms from Neighborhoods
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1902066 regulation of cell wall pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1902732 positive regulation of chondrocyte proliferation IEP Predict GO terms from Neighborhoods
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:1903321 negative regulation of protein modification by small protein conjugation or removal IEP Predict GO terms from Neighborhoods
BP GO:1903578 regulation of ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903579 negative regulation of ATP metabolic process IEP Predict GO terms from Neighborhoods
BP GO:1903792 negative regulation of anion transport IEP Predict GO terms from Neighborhoods
BP GO:1903959 regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1903960 negative regulation of anion transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1904018 positive regulation of vasculature development IEP Predict GO terms from Neighborhoods
BP GO:1905330 regulation of morphogenesis of an epithelium IEP Predict GO terms from Neighborhoods
BP GO:1905332 positive regulation of morphogenesis of an epithelium IEP Predict GO terms from Neighborhoods
BP GO:1905549 obsolete positive regulation of subtelomeric heterochromatin assembly IEP Predict GO terms from Neighborhoods
BP GO:1905553 regulation of blood vessel branching IEP Predict GO terms from Neighborhoods
BP GO:1905555 positive regulation of blood vessel branching IEP Predict GO terms from Neighborhoods
BP GO:1905562 regulation of vascular endothelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:1905564 positive regulation of vascular endothelial cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:1990258 histone glutamine methylation IEP Predict GO terms from Neighborhoods
BP GO:2000038 regulation of stomatal complex development IEP Predict GO terms from Neighborhoods
BP GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000068 regulation of defense response to insect IEP Predict GO terms from Neighborhoods
BP GO:2000114 regulation of establishment of cell polarity IEP Predict GO terms from Neighborhoods
BP GO:2000122 negative regulation of stomatal complex development IEP Predict GO terms from Neighborhoods
BP GO:2000232 regulation of rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:2000234 positive regulation of rRNA processing IEP Predict GO terms from Neighborhoods
BP GO:2000648 positive regulation of stem cell proliferation IEP Predict GO terms from Neighborhoods
BP GO:2000779 regulation of double-strand break repair IEP Predict GO terms from Neighborhoods
BP GO:2001032 regulation of double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:2001252 positive regulation of chromosome organization IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR011011 Znf_FYVE_PHD 14 67
IPR004343 Plus-3_dom 370 468
IPR036128 Plus3-like_sf 367 491
IPR003121 SWIB_MDM2_domain 239 312
IPR036885 SWIB_MDM2_dom_sf 230 317
No external refs found!