SOLTUB.AGRIA.G00000004497

Description : Protein COBRA

Gene families : OG_02_0003732 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004497
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_43

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
BP	GO:0002239	response to oomycetes	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005618	cell wall	None	Extended
CC	GO:0005774	vacuolar membrane	IEA	AHRD
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
CC	GO:0009505	plant-type cell wall	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	IEA	AHRD
BP	GO:0009825	multidimensional cell growth	IEA	AHRD
BP	GO:0009832	plant-type cell wall biogenesis	None	Extended
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEA	AHRD
CC	GO:0009930	longitudinal side of cell surface	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010215	cellulose microfibril organization	IEA	AHRD
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0030154	cell differentiation	IEA	AHRD
BP	GO:0030198	extracellular matrix organization	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	None	Extended
CC	GO:0030312	external encapsulating structure	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
BP	GO:0032501	multicellular organismal process	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034406	cell wall beta-glucan metabolic process	None	Extended
BP	GO:0034410	cell wall beta-glucan biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
BP	GO:0043062	extracellular structure organization	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
CC	GO:0046658	anchored component of plasma membrane	IEA	AHRD
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0052324	plant-type cell wall cellulose biosynthetic process	IEA	AHRD
BP	GO:0052541	plant-type cell wall cellulose metabolic process	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000325	plant-type vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0003006	developmental process involved in reproduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0003824	catalytic activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004016	adenylate cyclase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004180	carboxypeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004723	calcium-dependent protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005509	calcium ion binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0005513	detection of calcium ion	IEP	Predict GO terms from Neighborhoods
CC	GO:0005768	endosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005773	vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0005802	trans-Golgi network	IEP	Predict GO terms from Neighborhoods
CC	GO:0005955	calcineurin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006812	cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006863	purine nucleobase transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006968	cellular defense response	IEP	Predict GO terms from Neighborhoods
BP	GO:0006971	hypotonic response	IEP	Predict GO terms from Neighborhoods
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0008374	O-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008645	hexose transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008889	glycerophosphodiester phosphodiesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009268	response to pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0009620	response to fungus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009664	plant-type cell wall organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0009674	potassium:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009705	plant-type vacuole membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009827	plant-type cell wall modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009867	jasmonic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010043	response to zinc ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010093	specification of floral organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010097	specification of stamen identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010231	maintenance of seed dormancy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010398	xylogalacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010410	hemicellulose metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010446	response to alkaline pH	IEP	Predict GO terms from Neighborhoods
BP	GO:0010622	specification of ovule identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010623	programmed cell death involved in cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010930	negative regulation of auxin mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0015081	sodium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015370	solute:sodium symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015603	iron chelate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015757	galactose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015851	nucleobase transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0016407	acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016413	O-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016746	acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016747	acyltransferase activity, transferring groups other than amino-acyl groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016755	aminoacyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030007	cellular potassium ion homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0031410	cytoplasmic vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031982	vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0032578	aleurone grain membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032780	negative regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034755	iron ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0035252	UDP-xylosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0042285	xylosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0042539	hypotonic salinity response	IEP	Predict GO terms from Neighborhoods
BP	GO:0042545	cell wall modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043462	regulation of ATP-dependent activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0043565	sequence-specific DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045491	xylan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046618	xenobiotic export from cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0048281	inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048283	indeterminate inflorescence morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048316	seed development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048608	reproductive structure development	IEP	Predict GO terms from Neighborhoods
MF	GO:0051980	iron-nicotianamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0070008	serine-type exopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071555	cell wall organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090701	specification of plant organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097437	maintenance of dormancy	IEP	Predict GO terms from Neighborhoods
CC	GO:0097708	intracellular vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098660	inorganic ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098791	Golgi apparatus subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:1901428	regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901430	positive regulation of syringal lignin biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:1903293	phosphatase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:1990538	xylan O-acetyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1990573	potassium ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1990937	xylan acetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990961	xenobiotic detoxification by transmembrane export across the plasma membrane	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006918	COBRA_pln	48	208

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SOLTUB.AGRIA.G00000004497

Expression Profile

Co-expression Networks

Functional Annotation