SOLTUB.AGRIA.G00000004542

Description : Rhomboid family protein

Gene families : OG_02_0022067 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004542
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_245

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004252	serine-type endopeptidase activity	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005743	mitochondrial inner membrane	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006465	signal peptide processing	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006643	membrane lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006650	glycerophospholipid metabolic process	None	Extended
BP	GO:0006654	phosphatidic acid biosynthetic process	IEA	AHRD
BP	GO:0006664	glycolipid metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
CC	GO:0009528	plastid inner membrane	None	Extended
CC	GO:0009706	chloroplast inner membrane	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016485	protein processing	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019374	galactolipid metabolic process	IEA	AHRD
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
CC	GO:0030054	cell junction	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031966	mitochondrial membrane	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0045017	glycerolipid biosynthetic process	None	Extended
BP	GO:0046473	phosphatidic acid metabolic process	None	Extended
BP	GO:0046474	glycerophospholipid biosynthetic process	None	Extended
BP	GO:0046486	glycerolipid metabolic process	None	Extended
BP	GO:0051604	protein maturation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903509	liposaccharide metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000003	reproduction	IEP	Predict GO terms from Neighborhoods
BP	GO:0000245	spliceosomal complex assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0001845	phagolysosome assembly	IEP	Predict GO terms from Neighborhoods
MF	GO:0004709	MAP kinase kinase kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004712	protein serine/threonine/tyrosine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005767	secondary lysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006816	calcium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006817	phosphate ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006820	anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006835	dicarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006848	pyruvate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006850	mitochondrial pyruvate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006851	mitochondrial calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006862	nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006864	pyrimidine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0007040	lysosome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007260	tyrosine phosphorylation of STAT protein	IEP	Predict GO terms from Neighborhoods
BP	GO:0007399	nervous system development	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008514	organic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008517	folic acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009685	gibberellin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009686	gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009750	response to fructose	IEP	Predict GO terms from Neighborhoods
BP	GO:0009756	carbohydrate mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0010037	response to carbon dioxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010182	sugar mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0012510	trans-Golgi network transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015114	phosphate ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015228	coenzyme A transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015297	antiporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015711	organic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015718	monocarboxylic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015865	purine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015866	ADP transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015867	ATP transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015868	purine ribonucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015880	coenzyme A transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015883	FAD transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015884	folic acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015931	nucleobase-containing compound transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018108	peptidyl-tyrosine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018212	peptidyl-tyrosine modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0019953	sexual reproduction	IEP	Predict GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030139	endocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0030587	sorocarp development	IEP	Predict GO terms from Neighborhoods
CC	GO:0030658	transport vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030660	Golgi-associated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030662	coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030665	clathrin-coated vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030666	endocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0030670	phagocytic vesicle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032010	phagolysosome	IEP	Predict GO terms from Neighborhoods
BP	GO:0032388	positive regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0033157	regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035349	coenzyme A transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035350	FAD transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035352	NAD transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035435	phosphate ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035461	vitamin transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0036289	peptidyl-serine autophosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0036444	calcium import into the mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042306	regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0042307	positive regulation of protein import into nucleus	IEP	Predict GO terms from Neighborhoods
MF	GO:0042887	amide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043132	NAD transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0045335	phagocytic vesicle	IEP	Predict GO terms from Neighborhoods
BP	GO:0045472	response to ether	IEP	Predict GO terms from Neighborhoods
BP	GO:0045995	regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0046822	regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046824	positive regulation of nucleocytoplasmic transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0046963	3'-phosphoadenosine 5'-phosphosulfate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046964	3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051180	vitamin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051222	positive regulation of protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051282	regulation of sequestering of calcium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051503	adenine nucleotide transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051560	mitochondrial calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0051561	positive regulation of mitochondrial calcium ion concentration	IEP	Predict GO terms from Neighborhoods
BP	GO:0051592	response to calcium ion	IEP	Predict GO terms from Neighborhoods
MF	GO:0051724	NAD transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055074	calcium ion homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060972	left/right pattern formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	Predict GO terms from Neighborhoods
BP	GO:0070588	calcium ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0071077	adenosine 3',5'-bisphosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0071106	adenosine 3',5'-bisphosphate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071241	cellular response to inorganic substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0071244	cellular response to carbon dioxide	IEP	Predict GO terms from Neighborhoods
BP	GO:0071248	cellular response to metal ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071277	cellular response to calcium ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0072337	modified amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072348	sulfur compound transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072503	cellular divalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0072530	purine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080121	AMP transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0080122	AMP transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0080171	lytic vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0097274	urea homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098661	inorganic anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098838	folate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0106049	regulation of cellular response to osmotic stress	IEP	Predict GO terms from Neighborhoods
BP	GO:1900069	regulation of cellular hyperosmotic salinity response	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901264	carbohydrate derivative transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1901475	pyruvate transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1901679	nucleotide transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1902557	5'-adenylyl sulfate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902558	5'-adenylyl sulfate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902559	3'-phospho-5'-adenylyl sulfate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903013	response to differentiation-inducing factor 1	IEP	Predict GO terms from Neighborhoods
BP	GO:1904892	regulation of receptor signaling pathway via STAT	IEP	Predict GO terms from Neighborhoods
BP	GO:1904894	positive regulation of receptor signaling pathway via STAT	IEP	Predict GO terms from Neighborhoods
BP	GO:1904947	folate import into mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990548	mitochondrial FAD transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1990559	mitochondrial coenzyme A transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:2000031	regulation of salicylic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:2000035	regulation of stem cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:2000069	regulation of post-embryonic root development	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR022764	Peptidase_S54_rhomboid_dom	160	300
IPR035952	Rhomboid-like_sf	126	302

External Links

No external refs found!

SOLTUB.AGRIA.G00000004542

Expression Profile

Co-expression Networks

Functional Annotation