SOLTUB.AGRIA.G00000004987

Description : Reticulon-like protein

Gene families : OG_02_0012581 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000004987
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_248

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	AHRD
CC	GO:0005788	endoplasmic reticulum lumen	IEA	AHRD
CC	GO:0005794	Golgi apparatus	IEA	AHRD
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007029	endoplasmic reticulum organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009504	cell plate	IEA	AHRD
CC	GO:0009510	plasmodesmatal desmotubule	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	IEA	AHRD
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016021	integral component of membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0030176	integral component of endoplasmic reticulum membrane	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	None	Extended
CC	GO:0031300	intrinsic component of organelle membrane	None	Extended
CC	GO:0031301	integral component of organelle membrane	None	Extended
CC	GO:0031974	membrane-enclosed lumen	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043233	organelle lumen	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
CC	GO:0070013	intracellular organelle lumen	None	Extended
CC	GO:0071458	integral component of cytoplasmic side of endoplasmic reticulum membrane	IEA	AHRD
CC	GO:0071782	endoplasmic reticulum tubular network	IEA	AHRD
BP	GO:0071786	endoplasmic reticulum tubular network organization	IEA	AHRD
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080167	response to karrikin	IEA	AHRD
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098827	endoplasmic reticulum subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000054	ribosomal subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0000055	ribosomal large subunit export from nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:0001889	liver development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
BP	GO:0003159	morphogenesis of an endothelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004311	farnesyltranstransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004659	prenyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
CC	GO:0005730	nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:0005743	mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment	IEP	Predict GO terms from Neighborhoods
CC	GO:0005829	cytosol	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
CC	GO:0005956	protein kinase CK2 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006403	RNA localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006783	heme biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006784	heme A biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007309	oocyte axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007310	oocyte dorsal/ventral axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0007622	rhythmic behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0007626	locomotory behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0008062	eclosion rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0008298	intracellular mRNA localization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008495	protoheme IX farnesyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008535	respiratory chain complex IV assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0009648	photoperiodism	IEP	Predict GO terms from Neighborhoods
BP	GO:0009798	axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0009950	dorsal/ventral axis specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010090	trichome morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010594	regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010596	negative regulation of endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010632	regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010633	negative regulation of epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010921	regulation of phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016319	mushroom body development	IEP	Predict GO terms from Neighborhoods
CC	GO:0016363	nuclear matrix	IEP	Predict GO terms from Neighborhoods
BP	GO:0016485	protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0017004	cytochrome complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0018107	peptidyl-threonine phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018210	peptidyl-threonine modification	IEP	Predict GO terms from Neighborhoods
MF	GO:0019207	kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019221	cytokine-mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0019887	protein kinase regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030336	negative regulation of cell migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0030424	axon	IEP	Predict GO terms from Neighborhoods
BP	GO:0031099	regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031100	animal organ regeneration	IEP	Predict GO terms from Neighborhoods
BP	GO:0031445	regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031453	positive regulation of heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031503	protein-containing complex localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031519	PcG protein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0031593	polyubiquitin modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031594	neuromuscular junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0031981	nuclear lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031983	vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0032092	positive regulation of protein binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032925	regulation of activin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0032927	positive regulation of activin receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033211	adiponectin-activated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0033574	response to testosterone	IEP	Predict GO terms from Neighborhoods
BP	GO:0033750	ribosome localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0034456	UTP-C complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0034774	secretory granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0035239	tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0035303	regulation of dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0035304	regulation of protein dephosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0040013	negative regulation of locomotion	IEP	Predict GO terms from Neighborhoods
BP	GO:0042168	heme metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042753	positive regulation of circadian rhythm	IEP	Predict GO terms from Neighborhoods
MF	GO:0043021	ribonucleoprotein complex binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043023	ribosomal large subunit binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043393	regulation of protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043535	regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043537	negative regulation of blood vessel endothelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0043666	regulation of phosphoprotein phosphatase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0044877	protein-containing complex binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0045475	locomotor rhythm	IEP	Predict GO terms from Neighborhoods
BP	GO:0046160	heme a metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046719	regulation by virus of viral protein levels in host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046907	intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0048033	heme O metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048034	heme O biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048512	circadian behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0048573	photoperiodism, flowering	IEP	Predict GO terms from Neighborhoods
BP	GO:0050792	regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050804	modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0050807	regulation of synapse organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051098	regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051099	positive regulation of binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051168	nuclear export	IEP	Predict GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051641	cellular localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0060205	cytoplasmic vesicle lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:0060393	regulation of pathway-restricted SMAD protein phosphorylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060562	epithelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060810	intracellular mRNA localization involved in pattern specification process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061154	endothelial tube morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0070180	large ribosomal subunit rRNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0071900	regulation of protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0072710	response to hydroxyurea	IEP	Predict GO terms from Neighborhoods
BP	GO:0072711	cellular response to hydroxyurea	IEP	Predict GO terms from Neighborhoods
BP	GO:0080163	regulation of protein serine/threonine phosphatase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090052	regulation of pericentric heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090053	positive regulation of pericentric heterochromatin formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090092	regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090100	positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0097421	liver regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0097730	non-motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0097752	regulation of DNA stability	IEP	Predict GO terms from Neighborhoods
CC	GO:0098685	Schaffer collateral - CA1 synapse	IEP	Predict GO terms from Neighborhoods
BP	GO:0099170	postsynaptic modulation of chemical synaptic transmission	IEP	Predict GO terms from Neighborhoods
BP	GO:0099177	regulation of trans-synaptic signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0099522	cytosolic region	IEP	Predict GO terms from Neighborhoods
CC	GO:0099523	presynaptic cytosol	IEP	Predict GO terms from Neighborhoods
BP	GO:0120261	regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0120263	positive regulation of heterochromatin organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0140030	modification-dependent protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1900180	regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1900182	positive regulation of protein localization to nucleus	IEP	Predict GO terms from Neighborhoods
BP	GO:1901654	response to ketone	IEP	Predict GO terms from Neighborhoods
BP	GO:1902275	regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
CC	GO:1902554	serine/threonine protein kinase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1902911	protein kinase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1904749	regulation of protein localization to nucleolus	IEP	Predict GO terms from Neighborhoods
BP	GO:1904751	positive regulation of protein localization to nucleolus	IEP	Predict GO terms from Neighborhoods
CC	GO:1904813	ficolin-1-rich granule lumen	IEP	Predict GO terms from Neighborhoods
BP	GO:1905269	positive regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:2000146	negative regulation of cell motility	IEP	Predict GO terms from Neighborhoods
BP	GO:2001252	positive regulation of chromosome organization	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR003388	Reticulon	18	171

External Links

No external refs found!

SOLTUB.AGRIA.G00000004987

Expression Profile

Co-expression Networks

Functional Annotation