SOLTUB.AGRIA.G00000005069

Description : DNA-binding protein

Gene families : OG_02_0007783 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005069
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_169

Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEA	AHRD
BP	GO:0000302	response to reactive oxygen species	None	Extended
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	IEA	AHRD
BP	GO:0001514	selenocysteine incorporation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	None	Extended
CC	GO:0005684	U2-type spliceosomal complex	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006414	translational elongation	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006451	translational readthrough	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006979	response to oxidative stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008143	poly(A) binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010035	response to inorganic substance	None	Extended
BP	GO:0010193	response to ozone	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
CC	GO:0010494	cytoplasmic stress granule	IEA	AHRD
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034063	stress granule assembly	IEA	AHRD
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034605	cellular response to heat	IEA	AHRD
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051028	mRNA transport	IEA	AHRD
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070717	poly-purine tract binding	None	Extended
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0002178	palmitoyltransferase complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0004758	serine C-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005744	TIM23 mitochondrial import inner membrane translocase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006643	membrane lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006665	sphingolipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006667	sphinganine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006670	sphingosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006672	ceramide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006684	sphingomyelin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006686	sphingomyelin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006839	mitochondrial transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008320	protein transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009640	photomorphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010014	meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010071	root meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010078	maintenance of root meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0010506	regulation of autophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0010508	positive regulation of autophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015450	protein-transporting ATPase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0016032	viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016239	positive regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:0016241	regulation of macroautophagy	IEP	Predict GO terms from Neighborhoods
MF	GO:0016408	C-acyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016409	palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016454	C-palmitoyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0017059	serine C-palmitoyltransferase complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0019751	polyol metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019842	vitamin binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0022884	macromolecule transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030148	sphingolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030150	protein import into mitochondrial matrix	IEP	Predict GO terms from Neighborhoods
MF	GO:0030170	pyridoxal phosphate binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0031211	endoplasmic reticulum palmitoyltransferase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031301	integral component of organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031304	intrinsic component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031305	integral component of mitochondrial inner membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0032592	integral component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0034311	diol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034312	diol biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0035339	SPOTS complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0044000	movement in host	IEP	Predict GO terms from Neighborhoods
BP	GO:0044001	migration in host	IEP	Predict GO terms from Neighborhoods
BP	GO:0044743	protein transmembrane import into intracellular organelle	IEP	Predict GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046173	polyol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046511	sphinganine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046512	sphingosine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046513	ceramide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046519	sphingoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046520	sphingoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046739	transport of virus in multicellular host	IEP	Predict GO terms from Neighborhoods
BP	GO:0046740	transport of virus in host, cell to cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0046794	transport of virus	IEP	Predict GO terms from Neighborhoods
MF	GO:0046982	protein heterodimerization activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0051701	biological process involved in interaction with host	IEP	Predict GO terms from Neighborhoods
BP	GO:0060612	adipose tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061448	connective tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0065002	intracellular protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0070279	vitamin B6 binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0070585	protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0071806	protein transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072655	establishment of protein localization to mitochondrion	IEP	Predict GO terms from Neighborhoods
BP	GO:0080022	primary root development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0098573	intrinsic component of mitochondrial membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0140318	protein transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1904502	regulation of lipophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:1904504	positive regulation of lipophagy	IEP	Predict GO terms from Neighborhoods
BP	GO:1990542	mitochondrial transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	86	153
IPR000504	RRM_dom	179	249
IPR000504	RRM_dom	297	360
IPR035979	RBD_domain_sf	287	395
IPR035979	RBD_domain_sf	81	259

External Links

No external refs found!

SOLTUB.AGRIA.G00000005069

Expression Profile

Co-expression Networks

Functional Annotation