SOLTUB.AGRIA.G00000005467

Description : Sec1 family transport protein sly1

Gene families : OG_02_0002038 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005467
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_138

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0000149	SNARE binding	None	Extended
BP	GO:0000902	cell morphogenesis	IEA	AHRD
BP	GO:0001666	response to hypoxia	IEA	AHRD
BP	GO:0003002	regionalization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005783	endoplasmic reticulum	IEA	AHRD
CC	GO:0005798	Golgi-associated vesicle	IEA	AHRD
CC	GO:0005801	cis-Golgi network	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005886	plasma membrane	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	AHRD
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEA	AHRD
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007389	pattern specification process	None	Extended
BP	GO:0007447	imaginal disc pattern formation	None	Extended
BP	GO:0007450	dorsal/ventral pattern formation, imaginal disc	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009636	response to toxic substance	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009953	dorsal/ventral pattern formation	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010506	regulation of autophagy	None	Extended
BP	GO:0010507	negative regulation of autophagy	None	Extended
BP	GO:0010639	negative regulation of organelle organization	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016241	regulation of macroautophagy	None	Extended
BP	GO:0016242	negative regulation of macroautophagy	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019905	syntaxin binding	IEA	AHRD
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
BP	GO:0032386	regulation of intracellular transport	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032879	regulation of localization	None	Extended
BP	GO:0032880	regulation of protein localization	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0035222	wing disc pattern formation	None	Extended
BP	GO:0036293	response to decreased oxygen levels	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044088	regulation of vacuole organization	None	Extended
MF	GO:0044877	protein-containing complex binding	IEA	AHRD
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
MF	GO:0047485	protein N-terminus binding	IEA	AHRD
BP	GO:0048190	wing disc dorsal/ventral pattern formation	IEA	AHRD
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051049	regulation of transport	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051129	negative regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051223	regulation of protein transport	IEA	AHRD
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060341	regulation of cellular localization	None	Extended
BP	GO:0060627	regulation of vesicle-mediated transport	None	Extended
BP	GO:0060628	regulation of ER to Golgi vesicle-mediated transport	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070201	regulation of establishment of protein localization	None	Extended
BP	GO:0070482	response to oxygen levels	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901998	toxin transport	IEA	AHRD
BP	GO:1902115	regulation of organelle assembly	None	Extended
BP	GO:1902116	negative regulation of organelle assembly	None	Extended
BP	GO:1902902	negative regulation of autophagosome assembly	IEA	AHRD
BP	GO:2000785	regulation of autophagosome assembly	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000138	Golgi trans cisterna	IEP	Predict GO terms from Neighborhoods
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0001667	ameboidal-type cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0001702	gastrulation with mouth forming second	IEP	Predict GO terms from Neighborhoods
BP	GO:0002009	morphogenesis of an epithelium	IEP	Predict GO terms from Neighborhoods
MF	GO:0003979	UDP-glucose 6-dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005654	nucleoplasm	IEP	Predict GO terms from Neighborhoods
BP	GO:0005975	carbohydrate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0005976	polysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006023	aminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006024	glycosaminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006065	UDP-glucuronate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006508	proteolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0007365	periodic partitioning	IEP	Predict GO terms from Neighborhoods
BP	GO:0007367	segment polarity determination	IEP	Predict GO terms from Neighborhoods
BP	GO:0007369	gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0007427	epithelial cell migration, open tracheal system	IEP	Predict GO terms from Neighborhoods
BP	GO:0007509	mesoderm migration involved in gastrulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008078	mesodermal cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0008543	fibroblast growth factor receptor signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009057	macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010393	galacturonan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010498	proteasomal protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010631	epithelial cell migration	IEP	Predict GO terms from Neighborhoods
BP	GO:0015014	heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016055	Wnt signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0016477	cell migration	IEP	Predict GO terms from Neighborhoods
MF	GO:0016763	pentosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0018991	oviposition	IEP	Predict GO terms from Neighborhoods
BP	GO:0019098	reproductive behavior	IEP	Predict GO terms from Neighborhoods
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030163	protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030204	chondroitin sulfate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030206	chondroitin sulfate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031221	arabinan metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0031985	Golgi cisterna	IEP	Predict GO terms from Neighborhoods
MF	GO:0032182	ubiquitin-like protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0034214	protein hexamerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0034657	GID complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0035884	arabinan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0036503	ERAD pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0040025	vulval development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042074	cell migration involved in gastrulation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043130	ubiquitin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045488	pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046398	UDP-glucuronate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048468	cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048569	post-embryonic animal organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048666	neuron development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048729	tissue morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048821	erythrocyte development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048870	cell motility	IEP	Predict GO terms from Neighborhoods
MF	GO:0051287	NAD binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0052546	cell wall pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0061515	myeloid cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090130	tissue migration	IEP	Predict GO terms from Neighborhoods
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1903510	mucopolysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1905114	cell surface receptor signaling pathway involved in cell-cell signaling	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR036045	Sec1-like_sf	1	608
IPR001619	Sec1-like	35	601

External Links

No external refs found!

SOLTUB.AGRIA.G00000005467

Expression Profile

Co-expression Networks

Functional Annotation