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  5. SOLTUB.AGRIA.G00000005678

SOLTUB.AGRIA.G00000005678


Description : Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic


Gene families : OG_02_0005490 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005678
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_150


Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA AHRD
CC GO:0042644 chloroplast nucleoid IEA AHRD
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0006020 inositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006021 inositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006081 cellular aldehyde metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006090 pyruvate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006465 signal peptide processing IEP Predict GO terms from Neighborhoods
BP GO:0006644 phospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006650 glycerophospholipid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008236 serine-type peptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0008610 lipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0008654 phospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0008934 inositol monophosphate 1-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0009240 isopentenyl diphosphate biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0009532 plastid stroma IEP Predict GO terms from Neighborhoods
CC GO:0009570 chloroplast stroma IEP Predict GO terms from Neighborhoods
BP GO:0009668 plastid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0010027 thylakoid membrane organization IEP Predict GO terms from Neighborhoods
BP GO:0016485 protein processing IEP Predict GO terms from Neighborhoods
MF GO:0016779 nucleotidyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0017171 serine hydrolase activity IEP Predict GO terms from Neighborhoods
BP GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway IEP Predict GO terms from Neighborhoods
BP GO:0019637 organophosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019682 glyceraldehyde-3-phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0019751 polyol metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0043424 protein histidine kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0043647 inositol phosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045017 glycerolipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046164 alcohol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046165 alcohol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046173 polyol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046174 polyol catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046434 organophosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046490 isopentenyl diphosphate metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046855 inositol phosphate dephosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0050518 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051604 protein maturation IEP Predict GO terms from Neighborhoods
MF GO:0052745 inositol phosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0052832 inositol monophosphate 3-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0052833 inositol monophosphate 4-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0052834 inositol monophosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0070567 cytidylyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0071545 inositol phosphate catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0090407 organophosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1901616 organic hydroxy compound catabolic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003772 YceD 149 293
No external refs found!