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  5. SOLTUB.AGRIA.G00000005708

SOLTUB.AGRIA.G00000005708


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG_02_0001518 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005708
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_6

Target Alias Description ECC score Gene Family Method Actions
SOLTUB.AGRIA.G00000043339 No alias peptidoglycan-binding LysM domain-containing protein 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000043339 No alias peptidoglycan-binding LysM domain-containing protein 0.03 Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000043339 No alias peptidoglycan-binding LysM domain-containing protein 0.03 Orthogroups with 8 Potato genotypes

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005575 cellular_component IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005794 Golgi apparatus IEA AHRD
CC GO:0005886 plasma membrane IEA AHRD
BP GO:0007030 Golgi organization IEA AHRD
BP GO:0008150 biological_process IEA AHRD
CC GO:0016020 membrane IEA AHRD
CC GO:0016021 integral component of membrane IEA AHRD
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Type GO Term Name Evidence Source
CC GO:0000131 incipient cellular bud site IEP Predict GO terms from Neighborhoods
BP GO:0000165 MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0000196 cell wall integrity MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0000271 polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0000919 cell plate assembly IEP Predict GO terms from Neighborhoods
CC GO:0000935 division septum IEP Predict GO terms from Neighborhoods
BP GO:0001568 blood vessel development IEP Predict GO terms from Neighborhoods
BP GO:0002221 pattern recognition receptor signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0002764 immune response-regulating signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0003006 developmental process involved in reproduction IEP Predict GO terms from Neighborhoods
MF GO:0003677 DNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004672 protein kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0005347 ATP transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0005622 intracellular anatomical structure IEP Predict GO terms from Neighborhoods
CC GO:0005768 endosome IEP Predict GO terms from Neighborhoods
CC GO:0005779 integral component of peroxisomal membrane IEP Predict GO terms from Neighborhoods
CC GO:0005934 cellular bud tip IEP Predict GO terms from Neighborhoods
CC GO:0005935 cellular bud neck IEP Predict GO terms from Neighborhoods
CC GO:0005938 cell cortex IEP Predict GO terms from Neighborhoods
BP GO:0006004 fucose metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006635 fatty acid beta-oxidation IEP Predict GO terms from Neighborhoods
BP GO:0006862 nucleotide transport IEP Predict GO terms from Neighborhoods
BP GO:0007031 peroxisome organization IEP Predict GO terms from Neighborhoods
BP GO:0007165 signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007231 osmosensory signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0007263 nitric oxide mediated signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0007368 determination of left/right symmetry IEP Predict GO terms from Neighborhoods
BP GO:0008272 sulfate transport IEP Predict GO terms from Neighborhoods
CC GO:0009524 phragmoplast IEP Predict GO terms from Neighborhoods
BP GO:0009555 pollen development IEP Predict GO terms from Neighborhoods
BP GO:0009612 response to mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0009631 cold acclimation IEP Predict GO terms from Neighborhoods
BP GO:0009644 response to high light intensity IEP Predict GO terms from Neighborhoods
BP GO:0009652 thigmotropism IEP Predict GO terms from Neighborhoods
BP GO:0009695 jasmonic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009753 response to jasmonic acid IEP Predict GO terms from Neighborhoods
BP GO:0009791 post-embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0009855 determination of bilateral symmetry IEP Predict GO terms from Neighborhoods
BP GO:0009891 positive regulation of biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009893 positive regulation of metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009957 epidermal cell fate specification IEP Predict GO terms from Neighborhoods
BP GO:0009966 regulation of signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0009970 cellular response to sulfate starvation IEP Predict GO terms from Neighborhoods
BP GO:0010054 trichoblast differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010098 suspensor development IEP Predict GO terms from Neighborhoods
BP GO:0010103 stomatal complex morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010214 seed coat development IEP Predict GO terms from Neighborhoods
BP GO:0010229 inflorescence development IEP Predict GO terms from Neighborhoods
BP GO:0010289 homogalacturonan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010383 cell wall polysaccharide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010393 galacturonan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010394 homogalacturonan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010395 rhamnogalacturonan I metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010413 glucuronoxylan metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010417 glucuronoxylan biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010449 root meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0010514 induction of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010594 regulation of endothelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0010595 positive regulation of endothelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0010634 positive regulation of epithelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0010646 regulation of cell communication IEP Predict GO terms from Neighborhoods
BP GO:0010950 positive regulation of endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0010952 positive regulation of peptidase activity IEP Predict GO terms from Neighborhoods
MF GO:0015215 nucleotide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015217 ADP transmembrane transporter activity IEP Predict GO terms from Neighborhoods
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Predict GO terms from Neighborhoods
BP GO:0015865 purine nucleotide transport IEP Predict GO terms from Neighborhoods
BP GO:0015866 ADP transport IEP Predict GO terms from Neighborhoods
BP GO:0015867 ATP transport IEP Predict GO terms from Neighborhoods
BP GO:0015868 purine ribonucleotide transport IEP Predict GO terms from Neighborhoods
MF GO:0016165 linoleate 13S-lipoxygenase activity IEP Predict GO terms from Neighborhoods
MF GO:0016301 kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predict GO terms from Neighborhoods
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predict GO terms from Neighborhoods
MF GO:0019899 enzyme binding IEP Predict GO terms from Neighborhoods
MF GO:0019900 kinase binding IEP Predict GO terms from Neighborhoods
MF GO:0019901 protein kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0022414 reproductive process IEP Predict GO terms from Neighborhoods
BP GO:0023051 regulation of signaling IEP Predict GO terms from Neighborhoods
MF GO:0030165 PDZ domain binding IEP Predict GO terms from Neighborhoods
BP GO:0030242 autophagy of peroxisome IEP Predict GO terms from Neighborhoods
BP GO:0030258 lipid modification IEP Predict GO terms from Neighborhoods
BP GO:0030334 regulation of cell migration IEP Predict GO terms from Neighborhoods
CC GO:0030428 cell septum IEP Predict GO terms from Neighborhoods
BP GO:0030587 sorocarp development IEP Predict GO terms from Neighborhoods
BP GO:0030865 cortical cytoskeleton organization IEP Predict GO terms from Neighborhoods
MF GO:0030957 Tat protein binding IEP Predict GO terms from Neighborhoods
BP GO:0031098 stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0031122 cytoplasmic microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0031137 regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
BP GO:0031139 positive regulation of conjugation with cellular fusion IEP Predict GO terms from Neighborhoods
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Predict GO terms from Neighborhoods
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0031345 negative regulation of cell projection organization IEP Predict GO terms from Neighborhoods
CC GO:0031410 cytoplasmic vesicle IEP Predict GO terms from Neighborhoods
MF GO:0031434 mitogen-activated protein kinase kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0031638 zymogen activation IEP Predict GO terms from Neighborhoods
BP GO:0031667 response to nutrient levels IEP Predict GO terms from Neighborhoods
CC GO:0031982 vesicle IEP Predict GO terms from Neighborhoods
BP GO:0032206 positive regulation of telomere maintenance IEP Predict GO terms from Neighborhoods
BP GO:0032501 multicellular organismal process IEP Predict GO terms from Neighborhoods
CC GO:0032838 plasma membrane bounded cell projection cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:0032872 regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0032874 positive regulation of stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0034440 lipid oxidation IEP Predict GO terms from Neighborhoods
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0035266 meristem growth IEP Predict GO terms from Neighborhoods
BP GO:0035545 determination of left/right asymmetry in nervous system IEP Predict GO terms from Neighborhoods
BP GO:0035556 intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0040007 growth IEP Predict GO terms from Neighborhoods
BP GO:0040012 regulation of locomotion IEP Predict GO terms from Neighborhoods
BP GO:0043085 positive regulation of catalytic activity IEP Predict GO terms from Neighborhoods
BP GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEP Predict GO terms from Neighborhoods
BP GO:0043200 response to amino acid IEP Predict GO terms from Neighborhoods
BP GO:0043408 regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043410 positive regulation of MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0043535 regulation of blood vessel endothelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0043536 positive regulation of blood vessel endothelial cell migration IEP Predict GO terms from Neighborhoods
BP GO:0043547 positive regulation of GTPase activity IEP Predict GO terms from Neighborhoods
BP GO:0043622 cortical microtubule organization IEP Predict GO terms from Neighborhoods
BP GO:0044036 cell wall macromolecule metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045488 pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045489 pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0045893 positive regulation of DNA-templated transcription IEP Predict GO terms from Neighborhoods
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046662 regulation of oviposition IEP Predict GO terms from Neighborhoods
MF GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0048229 gametophyte development IEP Predict GO terms from Neighborhoods
BP GO:0048358 mucilage pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048363 mucilage pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0048367 shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0048520 positive regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0048583 regulation of response to stimulus IEP Predict GO terms from Neighborhoods
BP GO:0048589 developmental growth IEP Predict GO terms from Neighborhoods
BP GO:0048608 reproductive structure development IEP Predict GO terms from Neighborhoods
BP GO:0048731 system development IEP Predict GO terms from Neighborhoods
BP GO:0050795 regulation of behavior IEP Predict GO terms from Neighborhoods
BP GO:0050830 defense response to Gram-positive bacterium IEP Predict GO terms from Neighborhoods
MF GO:0051019 mitogen-activated protein kinase binding IEP Predict GO terms from Neighborhoods
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051254 positive regulation of RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0051403 stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0051503 adenine nucleotide transport IEP Predict GO terms from Neighborhoods
BP GO:0051703 biological process involved in intraspecies interaction between organisms IEP Predict GO terms from Neighborhoods
BP GO:0052325 cell wall pectin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0052546 cell wall pectin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0060237 regulation of fungal-type cell wall organization IEP Predict GO terms from Neighborhoods
BP GO:0060491 regulation of cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0070302 regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070304 positive regulation of stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
BP GO:0070542 response to fatty acid IEP Predict GO terms from Neighborhoods
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0071260 cellular response to mechanical stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071507 pheromone response MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:0071863 regulation of cell proliferation in bone marrow IEP Predict GO terms from Neighborhoods
BP GO:0071864 positive regulation of cell proliferation in bone marrow IEP Predict GO terms from Neighborhoods
BP GO:0080024 indolebutyric acid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0080142 regulation of salicylic acid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0080157 regulation of plant-type cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090049 regulation of cell migration involved in sprouting angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090050 positive regulation of cell migration involved in sprouting angiogenesis IEP Predict GO terms from Neighborhoods
BP GO:0090351 seedling development IEP Predict GO terms from Neighborhoods
BP GO:0090567 reproductive shoot system development IEP Predict GO terms from Neighborhoods
BP GO:0090626 plant epidermis morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0097202 activation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
BP GO:0097435 supramolecular fiber organization IEP Predict GO terms from Neighborhoods
CC GO:0097708 intracellular vesicle IEP Predict GO terms from Neighborhoods
CC GO:0098858 actin-based cell projection IEP Predict GO terms from Neighborhoods
BP GO:0099120 socially cooperative development IEP Predict GO terms from Neighborhoods
BP GO:0120032 regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
BP GO:0120033 negative regulation of plasma membrane bounded cell projection assembly IEP Predict GO terms from Neighborhoods
CC GO:0120111 neuron projection cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:1900150 regulation of defense response to fungus IEP Predict GO terms from Neighborhoods
BP GO:1900424 regulation of defense response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:1900744 regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1900745 positive regulation of p38MAPK cascade IEP Predict GO terms from Neighborhoods
BP GO:1901046 positive regulation of oviposition IEP Predict GO terms from Neighborhoods
BP GO:1901679 nucleotide transmembrane transport IEP Predict GO terms from Neighborhoods
BP GO:1901700 response to oxygen-containing compound IEP Predict GO terms from Neighborhoods
BP GO:1902017 regulation of cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902018 negative regulation of cilium assembly IEP Predict GO terms from Neighborhoods
BP GO:1902065 response to L-glutamate IEP Predict GO terms from Neighborhoods
BP GO:1902097 positive regulation of transcription from RNA polymerase II promoter involved in defense response to Gram-negative bacterium IEP Predict GO terms from Neighborhoods
BP GO:1902116 negative regulation of organelle assembly IEP Predict GO terms from Neighborhoods
BP GO:1902456 regulation of stomatal opening IEP Predict GO terms from Neighborhoods
BP GO:1902457 negative regulation of stomatal opening IEP Predict GO terms from Neighborhoods
BP GO:1902458 positive regulation of stomatal opening IEP Predict GO terms from Neighborhoods
BP GO:1902531 regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1902533 positive regulation of intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:1903338 regulation of cell wall organization or biogenesis IEP Predict GO terms from Neighborhoods
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Predict GO terms from Neighborhoods
CC GO:1904115 axon cytoplasm IEP Predict GO terms from Neighborhoods
BP GO:2000071 regulation of defense response by callose deposition IEP Predict GO terms from Neighborhoods
BP GO:2000145 regulation of cell motility IEP Predict GO terms from Neighborhoods
BP GO:2000573 positive regulation of DNA biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:2000772 regulation of cellular senescence IEP Predict GO terms from Neighborhoods
BP GO:2000773 negative regulation of cellular senescence IEP Predict GO terms from Neighborhoods
BP GO:2001056 positive regulation of cysteine-type endopeptidase activity IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018392 LysM_dom 35 78
IPR036779 LysM_dom_sf 33 78
No external refs found!