Description : Replication protein A 70 kDa DNA-binding subunit D
Gene families : OG_02_0000001 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000005889 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_59 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| SOLTUB.AGRIA.G00000007607 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000010685 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.06 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000018543 | No alias | Unknown protein | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000033439 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000036686 | No alias | Unknown protein | 0.05 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000041520 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.07 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000007607 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000010685 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.06 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000018543 | No alias | Unknown protein | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000033439 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000036686 | No alias | Unknown protein | 0.05 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000041520 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.07 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000007607 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000010685 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.06 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000018543 | No alias | Unknown protein | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000033439 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.08 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000036686 | No alias | Unknown protein | 0.05 | Orthogroups with 8 Potato genotypes | |
| SOLTUB.AGRIA.G00000041520 | No alias | Replication protein A 70 kDa DNA-binding subunit B | 0.07 | Orthogroups with 8 Potato genotypes |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005798 | Golgi-associated vesicle | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006012 | galactose metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006906 | vesicle fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007041 | lysosomal transport | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008333 | endosome to lysosome transport | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0009702 | L-arabinokinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016236 | macroautophagy | IEP | Predict GO terms from Neighborhoods |
| MF | GO:0019200 | carbohydrate kinase activity | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019321 | pentose metabolic process | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0019566 | arabinose metabolic process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030123 | AP-3 adaptor complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030897 | HOPS complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0031902 | late endosome membrane | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0034058 | endosomal vesicle fusion | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0046835 | carbohydrate phosphorylation | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0090174 | organelle membrane fusion | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0099023 | vesicle tethering complex | IEP | Predict GO terms from Neighborhoods |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR012340 | NA-bd_OB-fold | 351 | 453 |
| No external refs found! |