SOLTUB.AGRIA.G00000006161

Description : La protein homolog

Gene families : OG_02_0021694 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006161
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_83

Type	GO Term	Name	Evidence	Source
BP	GO:0000001	mitochondrion inheritance	IEA	AHRD
BP	GO:0000280	nuclear division	None	Extended
MF	GO:0000339	RNA cap binding	None	Extended
MF	GO:0000340	RNA 7-methylguanosine cap binding	IEA	AHRD
CC	GO:0000785	chromatin	None	Extended
CC	GO:0000791	euchromatin	IEA	AHRD
CC	GO:0000932	P-body	IEA	AHRD
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003727	single-stranded RNA binding	None	Extended
MF	GO:0003729	mRNA binding	None	Extended
MF	GO:0003730	mRNA 3'-UTR binding	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006275	regulation of DNA replication	None	Extended
BP	GO:0006417	regulation of translation	None	Extended
BP	GO:0006446	regulation of translational initiation	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007005	mitochondrion organization	None	Extended
BP	GO:0007140	male meiotic nuclear division	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
MF	GO:0008092	cytoskeletal protein binding	None	Extended
MF	GO:0008097	5S rRNA binding	None	Extended
MF	GO:0008098	5S rRNA primary transcript binding	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008187	poly-pyrimidine tract binding	None	Extended
MF	GO:0008190	eukaryotic initiation factor 4E binding	IEA	AHRD
MF	GO:0008266	poly(U) RNA binding	IEA	AHRD
BP	GO:0008283	cell population proliferation	IEA	AHRD
MF	GO:0008494	translation activator activity	IEA	AHRD
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009408	response to heat	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	AHRD
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0009991	response to extracellular stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010150	leaf senescence	IEA	AHRD
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010286	heat acclimation	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
CC	GO:0010494	cytoplasmic stress granule	IEA	AHRD
BP	GO:0010506	regulation of autophagy	None	Extended
BP	GO:0010508	positive regulation of autophagy	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0010712	regulation of collagen metabolic process	None	Extended
BP	GO:0010714	positive regulation of collagen metabolic process	None	Extended
BP	GO:0010821	regulation of mitochondrion organization	None	Extended
BP	GO:0010822	positive regulation of mitochondrion organization	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016239	positive regulation of macroautophagy	IEA	AHRD
BP	GO:0016241	regulation of macroautophagy	None	Extended
MF	GO:0017022	myosin binding	IEA	AHRD
BP	GO:0017148	negative regulation of translation	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0019898	extrinsic component of membrane	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022412	cellular process involved in reproduction in multicellular organism	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0030308	negative regulation of cell growth	IEA	AHRD
CC	GO:0031312	extrinsic component of organelle membrane	None	Extended
CC	GO:0031315	extrinsic component of mitochondrial outer membrane	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
BP	GO:0031331	positive regulation of cellular catabolic process	None	Extended
MF	GO:0031369	translation initiation factor binding	None	Extended
BP	GO:0031667	response to nutrient levels	None	Extended
BP	GO:0031929	TOR signaling	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032965	regulation of collagen biosynthetic process	None	Extended
BP	GO:0032967	positive regulation of collagen biosynthetic process	IEA	AHRD
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033993	response to lipid	IEA	AHRD
MF	GO:0034046	poly(G) binding	IEA	AHRD
BP	GO:0034248	regulation of cellular amide metabolic process	None	Extended
BP	GO:0034249	negative regulation of cellular amide metabolic process	None	Extended
BP	GO:0034250	positive regulation of cellular amide metabolic process	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035613	RNA stem-loop binding	IEA	AHRD
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0038202	TORC1 signaling	IEA	AHRD
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042594	response to starvation	None	Extended
CC	GO:0042788	polysomal ribosome	IEA	AHRD
MF	GO:0043021	ribonucleoprotein complex binding	None	Extended
MF	GO:0043024	ribosomal small subunit binding	IEA	AHRD
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043487	regulation of RNA stability	None	Extended
BP	GO:0043488	regulation of mRNA stability	None	Extended
BP	GO:0043489	RNA stabilization	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045069	regulation of viral genome replication	None	Extended
BP	GO:0045070	positive regulation of viral genome replication	IEA	AHRD
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0045472	response to ether	None	Extended
BP	GO:0045727	positive regulation of translation	None	Extended
BP	GO:0045740	positive regulation of DNA replication	None	Extended
BP	GO:0045926	negative regulation of growth	None	Extended
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0045947	negative regulation of translational initiation	IEA	AHRD
BP	GO:0045948	positive regulation of translational initiation	IEA	AHRD
MF	GO:0048027	mRNA 5'-UTR binding	IEA	AHRD
BP	GO:0048255	mRNA stabilization	IEA	AHRD
BP	GO:0048285	organelle fission	None	Extended
BP	GO:0048308	organelle inheritance	None	Extended
BP	GO:0048311	mitochondrion distribution	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048524	positive regulation of viral process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050792	regulation of viral process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051054	positive regulation of DNA metabolic process	None	Extended
BP	GO:0051098	regulation of binding	None	Extended
BP	GO:0051099	positive regulation of binding	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051646	mitochondrion localization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061013	regulation of mRNA catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
MF	GO:0070717	poly-purine tract binding	None	Extended
BP	GO:0070887	cellular response to chemical stimulus	None	Extended
BP	GO:0071310	cellular response to organic substance	None	Extended
BP	GO:0071362	cellular response to ether	None	Extended
BP	GO:0071407	cellular response to organic cyclic compound	None	Extended
BP	GO:0071417	cellular response to organonitrogen compound	None	Extended
BP	GO:0071495	cellular response to endogenous stimulus	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0072752	cellular response to rapamycin	IEA	AHRD
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
BP	GO:0090296	regulation of mitochondrial DNA replication	None	Extended
BP	GO:0090297	positive regulation of mitochondrial DNA replication	IEA	AHRD
BP	GO:0090329	regulation of DNA-templated DNA replication	None	Extended
BP	GO:0090693	plant organ senescence	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
BP	GO:0097306	cellular response to alcohol	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0140013	meiotic nuclear division	None	Extended
BP	GO:1901355	response to rapamycin	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901654	response to ketone	None	Extended
BP	GO:1901655	cellular response to ketone	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901699	cellular response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1901701	cellular response to oxygen-containing compound	None	Extended
BP	GO:1901858	regulation of mitochondrial DNA metabolic process	None	Extended
BP	GO:1901860	positive regulation of mitochondrial DNA metabolic process	None	Extended
BP	GO:1902369	negative regulation of RNA catabolic process	None	Extended
BP	GO:1902373	negative regulation of mRNA catabolic process	None	Extended
BP	GO:1902415	regulation of mRNA binding	None	Extended
BP	GO:1902416	positive regulation of mRNA binding	IEA	AHRD
BP	GO:1903046	meiotic cell cycle process	None	Extended
BP	GO:1903311	regulation of mRNA metabolic process	None	Extended
BP	GO:1903312	negative regulation of mRNA metabolic process	None	Extended
BP	GO:1903900	regulation of viral life cycle	None	Extended
BP	GO:1905214	regulation of RNA binding	None	Extended
BP	GO:1905216	positive regulation of RNA binding	None	Extended
MF	GO:1990825	sequence-specific mRNA binding	IEA	AHRD
BP	GO:1990928	response to amino acid starvation	IEA	AHRD
BP	GO:2000105	positive regulation of DNA-templated DNA replication	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0000469	cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	Predict GO terms from Neighborhoods
BP	GO:0001501	skeletal system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001510	RNA methylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003714	transcription corepressor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005905	clathrin-coated pit	IEP	Predict GO terms from Neighborhoods
BP	GO:0006022	aminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006023	aminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006024	glycosaminoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006029	proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006396	RNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006892	post-Golgi vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006897	endocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0006898	receptor-mediated endocytosis	IEP	Predict GO terms from Neighborhoods
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009100	glycoprotein metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009101	glycoprotein biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009911	positive regulation of flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0009937	regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0009938	negative regulation of gibberellic acid mediated signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0010014	meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010072	primary shoot apical meristem specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010229	inflorescence development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010336	gibberellic acid homeostasis	IEP	Predict GO terms from Neighborhoods
MF	GO:0015020	glucuronosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0016070	RNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016073	snRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016482	cytosolic transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0017069	snRNA binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0030117	membrane coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030118	clathrin coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030120	vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030124	AP-4 adaptor complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0030125	clathrin vesicle coat	IEP	Predict GO terms from Neighborhoods
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	Predict GO terms from Neighborhoods
CC	GO:0030131	clathrin adaptor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0030166	proteoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030201	heparan sulfate proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030203	glycosaminoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0030204	chondroitin sulfate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0030276	clathrin binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0030490	maturation of SSU-rRNA	IEP	Predict GO terms from Neighborhoods
CC	GO:0030532	small nuclear ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030684	preribosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032897	negative regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
CC	GO:0032991	protein-containing complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0034660	ncRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0040031	snRNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0043170	macromolecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0043388	positive regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0045596	negative regulation of cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046483	heterocycle metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046782	regulation of viral transcription	IEP	Predict GO terms from Neighborhoods
BP	GO:0048497	maintenance of floral organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048525	negative regulation of viral process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048731	system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050650	chondroitin sulfate proteoglycan biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0050654	chondroitin sulfate proteoglycan metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0051082	unfolded protein binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0051101	regulation of DNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0060090	molecular adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090304	nucleic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090421	embryonic meristem initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	Predict GO terms from Neighborhoods
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	Predict GO terms from Neighborhoods
BP	GO:0090700	maintenance of plant organ identity	IEP	Predict GO terms from Neighborhoods
BP	GO:0106349	snRNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:0120114	Sm-like protein family complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0120259	7SK snRNP	IEP	Predict GO terms from Neighborhoods
MF	GO:0140312	cargo adaptor activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1903510	mucopolysaccharide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990437	snRNA 2'-O-methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990438	U6 2'-O-snRNA methylation	IEP	Predict GO terms from Neighborhoods
CC	GO:1990904	ribonucleoprotein complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006630	La_HTH	406	461
IPR036390	WH_DNA-bd_sf	392	485

External Links

No external refs found!

SOLTUB.AGRIA.G00000006161

Expression Profile

Co-expression Networks

Functional Annotation