SOLTUB.AGRIA.G00000006472


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0005516 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006472
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_62


Type GO Term Name Evidence Source
BP GO:0000963 mitochondrial RNA processing IEA AHRD
MF GO:0003729 mRNA binding IEA AHRD
MF GO:0004519 endonuclease activity IEA AHRD
MF GO:0005515 protein binding IEA AHRD
CC GO:0005739 mitochondrion IEA AHRD
CC GO:0009507 chloroplast IEA AHRD
BP GO:0010087 phloem or xylem histogenesis IEA AHRD
BP GO:0010214 seed coat development IEA AHRD
BP GO:0010305 leaf vascular tissue pattern formation IEA AHRD
BP GO:0010588 cotyledon vascular tissue pattern formation IEA AHRD
BP GO:0016554 cytidine to uridine editing IEA AHRD
BP GO:0031425 chloroplast RNA processing IEA AHRD
BP GO:0080156 mitochondrial mRNA modification IEA AHRD
BP GO:0140547 acquisition of seed longevity IEA AHRD
BP GO:1900865 chloroplast RNA modification IEA AHRD
Type GO Term Name Evidence Source
CC GO:0009543 chloroplast thylakoid lumen IEP Predict GO terms from Neighborhoods
BP GO:0009756 carbohydrate mediated signaling IEP Predict GO terms from Neighborhoods
BP GO:0010109 regulation of photosynthesis IEP Predict GO terms from Neighborhoods
BP GO:0010110 regulation of photosynthesis, dark reaction IEP Predict GO terms from Neighborhoods
BP GO:0010182 sugar mediated signaling pathway IEP Predict GO terms from Neighborhoods
MF GO:0016151 nickel cation binding IEP Predict GO terms from Neighborhoods
CC GO:0022626 cytosolic ribosome IEP Predict GO terms from Neighborhoods
BP GO:0031334 positive regulation of protein-containing complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0031977 thylakoid lumen IEP Predict GO terms from Neighborhoods
CC GO:0031978 plastid thylakoid lumen IEP Predict GO terms from Neighborhoods
BP GO:0034059 response to anoxia IEP Predict GO terms from Neighborhoods
BP GO:0045912 negative regulation of carbohydrate metabolic process IEP Predict GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Predict GO terms from Neighborhoods
BP GO:0071454 cellular response to anoxia IEP Predict GO terms from Neighborhoods
BP GO:0080152 regulation of reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:0080153 negative regulation of reductive pentose-phosphate cycle IEP Predict GO terms from Neighborhoods
BP GO:1905156 negative regulation of photosynthesis IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 451
IPR002885 Pentatricopeptide_repeat 245 273
IPR002885 Pentatricopeptide_repeat 44 76
IPR002885 Pentatricopeptide_repeat 382 414
IPR002885 Pentatricopeptide_repeat 281 313
IPR002885 Pentatricopeptide_repeat 378 426
IPR002885 Pentatricopeptide_repeat 281 321
IPR002885 Pentatricopeptide_repeat 245 272
IPR002885 Pentatricopeptide_repeat 144 174
IPR002885 Pentatricopeptide_repeat 453 478
IPR002885 Pentatricopeptide_repeat 44 72
IPR011990 TPR-like_helical_dom_sf 254 538
IPR032867 DYW_dom 552 676
No external refs found!