SOLTUB.AGRIA.G00000006509

Description : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

Gene families : OG_02_0017962 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000006509
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_261

Target	Alias	Description	ECC score	Gene Family Method
SOLTUB.AGRIA.G00000042805	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.11	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042805	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.11	Orthogroups with 8 Potato genotypes
SOLTUB.AGRIA.G00000042805	No alias	Nuclear transport factor 2 (NTF2) family protein with...	0.11	Orthogroups with 8 Potato genotypes

Type	GO Term	Name	Evidence	Source
BP	GO:0001817	regulation of cytokine production	None	Extended
BP	GO:0001819	positive regulation of cytokine production	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	AHRD
MF	GO:0003724	RNA helicase activity	IEA	AHRD
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008186	ATP-dependent activity, acting on RNA	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
CC	GO:0010494	cytoplasmic stress granule	IEA	AHRD
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0010638	positive regulation of organelle organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0032479	regulation of type I interferon production	None	Extended
BP	GO:0032481	positive regulation of type I interferon production	IEA	AHRD
BP	GO:0033043	regulation of organelle organization	None	Extended
MF	GO:0033677	DNA/RNA helicase activity	IEA	AHRD
CC	GO:0035770	ribonucleoprotein granule	None	Extended
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	IEA	AHRD
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
BP	GO:0044089	positive regulation of cellular component biogenesis	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	IEA	AHRD
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051240	positive regulation of multicellular organismal process	None	Extended
BP	GO:0051607	defense response to virus	IEA	AHRD
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0062028	regulation of stress granule assembly	None	Extended
BP	GO:0062029	positive regulation of stress granule assembly	IEA	AHRD
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0099080	supramolecular complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:0140546	defense response to symbiont	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1902115	regulation of organelle assembly	None	Extended
BP	GO:1902117	positive regulation of organelle assembly	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000281	mitotic cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0000910	cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0001568	blood vessel development	IEP	Predict GO terms from Neighborhoods
BP	GO:0001732	formation of cytoplasmic translation initiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0001942	hair follicle development	IEP	Predict GO terms from Neighborhoods
BP	GO:0002183	cytoplasmic translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0002188	translation reinitiation	IEP	Predict GO terms from Neighborhoods
MF	GO:0003729	mRNA binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0003743	translation initiation factor activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003854	3-beta-hydroxy-delta5-steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Predict GO terms from Neighborhoods
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0006304	DNA modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0006305	DNA alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006306	DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006413	translational initiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006479	protein methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0006694	steroid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007224	smoothened signaling pathway	IEP	Predict GO terms from Neighborhoods
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0008152	metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008203	cholesterol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008213	protein alkylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0008356	asymmetric cell division	IEP	Predict GO terms from Neighborhoods
MF	GO:0009008	DNA-methyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009292	horizontal gene transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0009294	DNA-mediated transformation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010069	zygote asymmetric cytokinesis in embryo sac	IEP	Predict GO terms from Neighborhoods
BP	GO:0010070	zygote asymmetric cell division	IEP	Predict GO terms from Neighborhoods
BP	GO:0010216	maintenance of DNA methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0010425	DNA methylation on cytosine within a CNG sequence	IEP	Predict GO terms from Neighborhoods
BP	GO:0010426	DNA methylation on cytosine within a CHH sequence	IEP	Predict GO terms from Neighborhoods
CC	GO:0014069	postsynaptic density	IEP	Predict GO terms from Neighborhoods
BP	GO:0016125	sterol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016126	sterol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0016282	eukaryotic 43S preinitiation complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0016571	histone methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018022	peptidyl-lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0022404	molting cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022405	hair cycle process	IEP	Predict GO terms from Neighborhoods
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
MF	GO:0030971	receptor tyrosine kinase binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032409	regulation of transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0032776	DNA methylation on cytosine	IEP	Predict GO terms from Neighborhoods
CC	GO:0033290	eukaryotic 48S preinitiation complex	IEP	Predict GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0034605	cellular response to heat	IEP	Predict GO terms from Neighborhoods
BP	GO:0034968	histone lysine methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042773	ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042775	mitochondrial ATP synthesis coupled electron transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0043408	regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0043409	negative regulation of MAPK cascade	IEP	Predict GO terms from Neighborhoods
CC	GO:0043614	multi-eIF complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0044728	DNA methylation or demethylation	IEP	Predict GO terms from Neighborhoods
MF	GO:0045182	translation regulator activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0046165	alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047012	sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048568	embryonic organ development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051567	histone H3-K9 methylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060674	placenta blood vessel development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060716	labyrinthine layer blood vessel development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060918	auxin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0061640	cytoskeleton-dependent cytokinesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0061647	histone H3-K9 modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0070372	regulation of ERK1 and ERK2 cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0070373	negative regulation of ERK1 and ERK2 cascade	IEP	Predict GO terms from Neighborhoods
CC	GO:0070993	translation preinitiation complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0071540	eukaryotic translation initiation factor 3 complex, eIF3e	IEP	Predict GO terms from Neighborhoods
CC	GO:0071541	eukaryotic translation initiation factor 3 complex, eIF3m	IEP	Predict GO terms from Neighborhoods
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0099572	postsynaptic specialization	IEP	Predict GO terms from Neighborhoods
MF	GO:0102175	3-beta-hydroxysteroid dehydrogenase/C4-decarboxylase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102191	4alpha-carboxy-5alpha-cholesta-7,24-dien-3beta-ol dehydrogenase/C4-decarboxylase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1902275	regulation of chromatin organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902652	secondary alcohol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902653	secondary alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:1990782	protein tyrosine kinase binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR035979	RBD_domain_sf	264	386
IPR000504	RRM_dom	280	338
IPR032710	NTF2-like_dom_sf	10	103
IPR002075	NTF2_dom	14	103

External Links

No external refs found!

SOLTUB.AGRIA.G00000006509

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation