SOLTUB.AGRIA.G00000007073


Description : Phytochrome


Gene families : OG_02_0018714 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007073
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_88


Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA AHRD
BP GO:0000160 phosphorelay signal transduction system IEA AHRD
CC GO:0005829 cytosol IEA AHRD
BP GO:0006325 chromatin organization IEA AHRD
BP GO:0009409 response to cold IEA AHRD
BP GO:0009584 detection of visible light IEA AHRD
BP GO:0009585 red, far-red light phototransduction IEA AHRD
BP GO:0009630 gravitropism IEA AHRD
BP GO:0009638 phototropism IEA AHRD
BP GO:0009640 photomorphogenesis IEA AHRD
BP GO:0009649 entrainment of circadian clock IEA AHRD
BP GO:0009687 abscisic acid metabolic process IEA AHRD
BP GO:0009867 jasmonic acid mediated signaling pathway IEA AHRD
BP GO:0009903 chloroplast avoidance movement IEA AHRD
BP GO:0010029 regulation of seed germination IEA AHRD
BP GO:0010148 transpiration IEA AHRD
BP GO:0010161 red light signaling pathway IEA AHRD
BP GO:0010202 response to low fluence red light stimulus IEA AHRD
BP GO:0010218 response to far red light IEA AHRD
BP GO:0010244 response to low fluence blue light stimulus by blue low-fluence system IEA AHRD
BP GO:0010374 stomatal complex development IEA AHRD
BP GO:0010617 circadian regulation of calcium ion oscillation IEA AHRD
BP GO:0015979 photosynthesis IEA AHRD
CC GO:0016604 nuclear body IEA AHRD
BP GO:0017009 protein-phycocyanobilin linkage IEA AHRD
BP GO:0017012 protein-phytochromobilin linkage IEA AHRD
BP GO:0018298 obsolete protein-chromophore linkage IEA AHRD
BP GO:0031347 regulation of defense response IEA AHRD
MF GO:0031516 far-red light photoreceptor activity IEA AHRD
MF GO:0031517 red light photoreceptor activity IEA AHRD
MF GO:0042803 protein homodimerization activity IEA AHRD
MF GO:0043565 sequence-specific DNA binding IEA AHRD
BP GO:0045892 negative regulation of DNA-templated transcription IEA AHRD
MF GO:1990841 promoter-specific chromatin binding IEA AHRD
BP GO:2000028 regulation of photoperiodism, flowering IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade IEP Predict GO terms from Neighborhoods
MF GO:0000822 inositol hexakisphosphate binding IEP Predict GO terms from Neighborhoods
BP GO:0001845 phagolysosome assembly IEP Predict GO terms from Neighborhoods
MF GO:0004675 transmembrane receptor protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004712 protein serine/threonine/tyrosine kinase activity IEP Predict GO terms from Neighborhoods
CC GO:0005767 secondary lysosome IEP Predict GO terms from Neighborhoods
CC GO:0005768 endosome IEP Predict GO terms from Neighborhoods
CC GO:0005802 trans-Golgi network IEP Predict GO terms from Neighborhoods
CC GO:0005886 plasma membrane IEP Predict GO terms from Neighborhoods
BP GO:0006468 protein phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0006767 water-soluble vitamin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006793 phosphorus metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006796 phosphate-containing compound metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006817 phosphate ion transport IEP Predict GO terms from Neighborhoods
BP GO:0006928 obsolete movement of cell or subcellular component IEP Predict GO terms from Neighborhoods
BP GO:0007010 cytoskeleton organization IEP Predict GO terms from Neighborhoods
BP GO:0007040 lysosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007254 JNK cascade IEP Predict GO terms from Neighborhoods
BP GO:0009617 response to bacterium IEP Predict GO terms from Neighborhoods
BP GO:0009685 gibberellin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0009686 gibberellin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009750 response to fructose IEP Predict GO terms from Neighborhoods
BP GO:0009904 chloroplast accumulation movement IEP Predict GO terms from Neighborhoods
BP GO:0009960 endosperm development IEP Predict GO terms from Neighborhoods
BP GO:0010018 far-red light signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010020 chloroplast fission IEP Predict GO terms from Neighborhoods
BP GO:0010104 regulation of ethylene-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0010105 negative regulation of ethylene-activated signaling pathway IEP Predict GO terms from Neighborhoods
CC GO:0012506 vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP Predict GO terms from Neighborhoods
MF GO:0015114 phosphate ion transmembrane transporter activity IEP Predict GO terms from Neighborhoods
CC GO:0016020 membrane IEP Predict GO terms from Neighborhoods
BP GO:0016310 phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0016569 obsolete covalent chromatin modification IEP Predict GO terms from Neighborhoods
BP GO:0016572 obsolete histone phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0018107 peptidyl-threonine phosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0018210 peptidyl-threonine modification IEP Predict GO terms from Neighborhoods
BP GO:0019852 L-ascorbic acid metabolic process IEP Predict GO terms from Neighborhoods
CC GO:0030426 growth cone IEP Predict GO terms from Neighborhoods
CC GO:0030658 transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030659 cytoplasmic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030660 Golgi-associated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030666 endocytic vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0031098 stress-activated protein kinase signaling cascade IEP Predict GO terms from Neighborhoods
CC GO:0031410 cytoplasmic vesicle IEP Predict GO terms from Neighborhoods
CC GO:0031982 vesicle IEP Predict GO terms from Neighborhoods
CC GO:0031984 organelle subcompartment IEP Predict GO terms from Neighborhoods
CC GO:0032010 phagolysosome IEP Predict GO terms from Neighborhoods
BP GO:0033674 positive regulation of kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0034595 phosphatidylinositol phosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0034596 phosphatidylinositol phosphate 4-phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0036092 phosphatidylinositol-3-phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
MF GO:0036094 small molecule binding IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
CC GO:0036477 somatodendritic compartment IEP Predict GO terms from Neighborhoods
BP GO:0042742 defense response to bacterium IEP Predict GO terms from Neighborhoods
MF GO:0043178 alcohol binding IEP Predict GO terms from Neighborhoods
CC GO:0043227 membrane-bounded organelle IEP Predict GO terms from Neighborhoods
CC GO:0043231 intracellular membrane-bounded organelle IEP Predict GO terms from Neighborhoods
BP GO:0043405 regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043406 positive regulation of MAP kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043506 regulation of JUN kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043507 positive regulation of JUN kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0043523 regulation of neuron apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043524 negative regulation of neuron apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:0043572 plastid fission IEP Predict GO terms from Neighborhoods
MF GO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity IEP Predict GO terms from Neighborhoods
CC GO:0045335 phagocytic vesicle IEP Predict GO terms from Neighborhoods
BP GO:0045793 positive regulation of cell size IEP Predict GO terms from Neighborhoods
BP GO:0045860 positive regulation of protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0046488 phosphatidylinositol metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0046777 protein autophosphorylation IEP Predict GO terms from Neighborhoods
BP GO:0046854 phosphatidylinositol phosphate biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048666 neuron development IEP Predict GO terms from Neighborhoods
BP GO:0051403 stress-activated MAPK cascade IEP Predict GO terms from Neighborhoods
MF GO:0052744 phosphatidylinositol monophosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0052866 phosphatidylinositol phosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0055062 phosphate ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0055069 zinc ion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0070297 regulation of phosphorelay signal transduction system IEP Predict GO terms from Neighborhoods
BP GO:0070298 negative regulation of phosphorelay signal transduction system IEP Predict GO terms from Neighborhoods
BP GO:0070372 regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0070374 positive regulation of ERK1 and ERK2 cascade IEP Predict GO terms from Neighborhoods
BP GO:0071490 cellular response to far red light IEP Predict GO terms from Neighborhoods
BP GO:0071902 positive regulation of protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0072506 trivalent inorganic anion homeostasis IEP Predict GO terms from Neighborhoods
BP GO:0080050 regulation of seed development IEP Predict GO terms from Neighborhoods
BP GO:0080113 regulation of seed growth IEP Predict GO terms from Neighborhoods
BP GO:0080171 lytic vacuole organization IEP Predict GO terms from Neighborhoods
CC GO:0097708 intracellular vesicle IEP Predict GO terms from Neighborhoods
CC GO:0098791 Golgi apparatus subcompartment IEP Predict GO terms from Neighborhoods
MF GO:0106018 phosphatidylinositol-3,5-bisphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
MF GO:0106310 protein serine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1901215 negative regulation of neuron death IEP Predict GO terms from Neighborhoods
BP GO:1901334 lactone metabolic process IEP Predict GO terms from Neighborhoods
BP GO:2000031 regulation of salicylic acid mediated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:2000035 regulation of stem cell division IEP Predict GO terms from Neighborhoods
BP GO:2000671 regulation of motor neuron apoptotic process IEP Predict GO terms from Neighborhoods
BP GO:2000672 negative regulation of motor neuron apoptotic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR003018 GAF 233 403
IPR036890 HATPase_C_sf 971 1119
IPR000014 PAS 625 741
IPR013515 Phytochrome_cen-reg 416 592
IPR003661 HisK_dim/P 897 954
IPR013767 PAS_fold 621 736
IPR013767 PAS_fold 752 872
IPR035965 PAS-like_dom_sf 766 868
IPR013654 PAS_2 91 200
IPR003594 HATPase_C 1016 1120
IPR035965 PAS-like_dom_sf 624 732
IPR035965 PAS-like_dom_sf 95 202
No external refs found!