Coexpression cluster: Cluster_88 (HCCA Clusters (HRR 50 & PCC 0.5))

View as:



Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0009657 plastid organization 20.24% (17/84) 3.8 0.0 0.0
GO:0009658 chloroplast organization 19.05% (16/84) 3.9 0.0 0.0
GO:0006996 organelle organization 30.95% (26/84) 1.99 0.0 0.0
GO:0080046 quercetin 4'-O-glucosyltransferase activity 7.14% (6/84) 5.77 0.0 1e-06
GO:0009902 chloroplast relocation 7.14% (6/84) 5.02 0.0 1e-05
GO:0051667 establishment of plastid localization 7.14% (6/84) 5.02 0.0 1e-05
GO:0016020 membrane 57.14% (48/84) 1.02 0.0 1e-05
GO:0019750 chloroplast localization 7.14% (6/84) 4.91 0.0 1.1e-05
GO:0051644 plastid localization 7.14% (6/84) 4.91 0.0 1.1e-05
GO:0008152 metabolic process 69.05% (58/84) 0.8 0.0 1.3e-05
GO:0009904 chloroplast accumulation movement 5.95% (5/84) 5.43 0.0 2e-05
GO:0016043 cellular component organization 40.48% (34/84) 1.31 0.0 2.1e-05
GO:0005575 cellular_component 86.9% (73/84) 0.51 0.0 2.5e-05
GO:0003674 molecular_function 85.71% (72/84) 0.52 0.0 2.9e-05
GO:0005488 binding 77.38% (65/84) 0.63 0.0 3.3e-05
GO:0110165 cellular anatomical entity 85.71% (72/84) 0.51 0.0 3.8e-05
GO:0071704 organic substance metabolic process 64.29% (54/84) 0.8 0.0 4.2e-05
GO:0071840 cellular component organization or biogenesis 40.48% (34/84) 1.22 1e-06 5.9e-05
GO:0008150 biological_process 85.71% (72/84) 0.48 1e-06 0.000107
GO:0009314 response to radiation 25.0% (21/84) 1.68 1e-06 0.000137
GO:0009628 response to abiotic stimulus 41.67% (35/84) 1.12 2e-06 0.000155
GO:0009987 cellular process 77.38% (65/84) 0.57 2e-06 0.000162
GO:0009903 chloroplast avoidance movement 4.76% (4/84) 5.37 3e-06 0.00024
GO:0050275 scopoletin glucosyltransferase activity 4.76% (4/84) 5.22 4e-06 0.000352
GO:0001108 bacterial-type RNA polymerase holo enzyme binding 2.38% (2/84) 8.86 5e-06 0.000364
GO:0000166 nucleotide binding 27.38% (23/84) 1.43 7e-06 0.000523
GO:1901265 nucleoside phosphate binding 27.38% (23/84) 1.43 7e-06 0.000523
GO:0009637 response to blue light 8.33% (7/84) 3.24 1e-05 0.000683
GO:0080044 quercetin 7-O-glucosyltransferase activity 5.95% (5/84) 4.15 1e-05 0.000697
GO:0009416 response to light stimulus 22.62% (19/84) 1.6 1.1e-05 0.000707
GO:0036094 small molecule binding 28.57% (24/84) 1.35 1.1e-05 0.000711
GO:0044238 primary metabolic process 54.76% (46/84) 0.78 1.2e-05 0.000739
GO:0009703 nitrate reductase (NADH) activity 2.38% (2/84) 8.28 1.4e-05 0.000802
GO:0050464 nitrate reductase (NADPH) activity 2.38% (2/84) 8.28 1.4e-05 0.000802
GO:0050896 response to stimulus 61.9% (52/84) 0.68 1.4e-05 0.000821
GO:0005829 cytosol 32.14% (27/84) 1.17 2.5e-05 0.001327
GO:0051656 establishment of organelle localization 8.33% (7/84) 3.04 2.4e-05 0.001356
GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor 2.38% (2/84) 7.86 2.7e-05 0.001362
GO:0050463 nitrate reductase [NAD(P)H] activity 2.38% (2/84) 7.86 2.7e-05 0.001362
GO:0033554 cellular response to stress 25.0% (21/84) 1.4 2.7e-05 0.001417
GO:0080043 quercetin 3-O-glucosyltransferase activity 5.95% (5/84) 3.81 3.1e-05 0.00149
GO:0051716 cellular response to stimulus 32.14% (27/84) 1.13 4.4e-05 0.002096
GO:0005515 protein binding 59.52% (50/84) 0.65 4.6e-05 0.002098
GO:0008940 nitrate reductase activity 2.38% (2/84) 7.54 4.5e-05 0.002108
GO:0042440 pigment metabolic process 8.33% (7/84) 2.87 5.2e-05 0.002297
GO:0050502 cis-zeatin O-beta-D-glucosyltransferase activity 4.76% (4/84) 4.25 6.1e-05 0.002665
GO:0043231 intracellular membrane-bounded organelle 55.95% (47/84) 0.68 6.4e-05 0.002703
GO:0003824 catalytic activity 53.57% (45/84) 0.7 8e-05 0.003338
GO:0043227 membrane-bounded organelle 55.95% (47/84) 0.66 8.7e-05 0.003537
GO:0050403 trans-zeatin O-beta-D-glucosyltransferase activity 4.76% (4/84) 4.09 9.3e-05 0.003709
GO:0043167 ion binding 35.71% (30/84) 0.98 0.0001 0.003825
GO:0005886 plasma membrane 29.76% (25/84) 1.12 9.8e-05 0.003831
GO:0006979 response to oxidative stress 14.29% (12/84) 1.82 0.000138 0.005191
GO:0006629 lipid metabolic process 20.24% (17/84) 1.43 0.000149 0.005416
GO:0044249 cellular biosynthetic process 29.76% (25/84) 1.09 0.000148 0.005467
GO:0016109 tetraterpenoid biosynthetic process 3.57% (3/84) 4.83 0.000164 0.005553
GO:0016117 carotenoid biosynthetic process 3.57% (3/84) 4.83 0.000164 0.005553
GO:0051640 organelle localization 8.33% (7/84) 2.59 0.000171 0.005684
GO:0051270 obsolete regulation of cellular component movement 2.38% (2/84) 6.69 0.000163 0.005694
GO:0030151 molybdenum ion binding 2.38% (2/84) 6.69 0.000163 0.005694
GO:0016740 transferase activity 30.95% (26/84) 1.04 0.00018 0.005901
GO:0035251 UDP-glucosyltransferase activity 7.14% (6/84) 2.84 0.000198 0.006359
GO:0016987 sigma factor activity 2.38% (2/84) 6.54 0.000203 0.00643
GO:0016131 brassinosteroid metabolic process 4.76% (4/84) 3.79 0.000212 0.006607
GO:0043229 intracellular organelle 59.52% (50/84) 0.58 0.000222 0.006814
GO:0043226 organelle 59.52% (50/84) 0.57 0.000261 0.007892
GO:1901562 response to paraquat 2.38% (2/84) 6.28 0.000297 0.008843
GO:0051128 regulation of cellular component organization 16.67% (14/84) 1.52 0.000323 0.009341
GO:0006721 terpenoid metabolic process 9.52% (8/84) 2.23 0.000319 0.009352
GO:0032201 telomere maintenance via semi-conservative replication 2.38% (2/84) 6.16 0.000351 0.009579
GO:0009058 biosynthetic process 30.95% (26/84) 0.98 0.000343 0.009627
GO:0016128 phytosteroid metabolic process 4.76% (4/84) 3.6 0.00035 0.009696
GO:0098754 detoxification 7.14% (6/84) 2.7 0.000342 0.009739
GO:0044237 cellular metabolic process 52.38% (44/84) 0.63 0.000369 0.009805
GO:0042221 response to chemical 41.67% (35/84) 0.77 0.000364 0.009814
GO:0044281 small molecule metabolic process 22.62% (19/84) 1.21 0.000409 0.010745
GO:0046527 glucosyltransferase activity 7.14% (6/84) 2.63 0.000429 0.011121
GO:0030670 phagocytic vesicle membrane 3.57% (3/84) 4.32 0.000472 0.011218
GO:0016108 tetraterpenoid metabolic process 3.57% (3/84) 4.32 0.000472 0.011218
GO:0016116 carotenoid metabolic process 3.57% (3/84) 4.32 0.000472 0.011218
GO:0007010 cytoskeleton organization 9.52% (8/84) 2.15 0.000459 0.011586
GO:0004337 geranyltranstransferase activity 2.38% (2/84) 5.96 0.000471 0.011589
GO:0043546 molybdopterin cofactor binding 2.38% (2/84) 5.96 0.000471 0.011589
GO:0065008 regulation of biological quality 25.0% (21/84) 1.11 0.000453 0.011592
GO:0071482 cellular response to light stimulus 7.14% (6/84) 2.58 0.000527 0.012235
GO:0006807 nitrogen compound metabolic process 45.24% (38/84) 0.7 0.000524 0.012295
GO:0035082 axoneme assembly 2.38% (2/84) 5.86 0.000537 0.012314
GO:0006950 response to stress 45.24% (38/84) 0.69 0.000547 0.012394
GO:0001578 microtubule bundle formation 3.57% (3/84) 4.18 0.000624 0.013996
GO:0006720 isoprenoid metabolic process 10.71% (9/84) 1.91 0.000649 0.014376
GO:0010114 response to red light 5.95% (5/84) 2.84 0.000686 0.014872
GO:0004311 farnesyltranstransferase activity 2.38% (2/84) 5.69 0.000683 0.014968
GO:0010218 response to far red light 4.76% (4/84) 3.32 0.000726 0.015577
GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors 2.38% (2/84) 5.61 0.000762 0.016172
GO:0006082 organic acid metabolic process 17.86% (15/84) 1.31 0.000881 0.018507
GO:0046148 pigment biosynthetic process 5.95% (5/84) 2.74 0.000956 0.019867
GO:0071478 cellular response to radiation 7.14% (6/84) 2.41 0.000967 0.019886
GO:0099515 actin filament-based transport 2.38% (2/84) 5.4 0.001025 0.020657
GO:0006817 phosphate ion transport 3.57% (3/84) 3.94 0.001015 0.020658
GO:0010224 response to UV-B 5.95% (5/84) 2.69 0.001111 0.022159
GO:0071483 cellular response to blue light 3.57% (3/84) 3.86 0.001184 0.023393
GO:0016134 saponin metabolic process 4.76% (4/84) 3.12 0.001197 0.02341
GO:0099081 supramolecular polymer 7.14% (6/84) 2.33 0.001284 0.024161
GO:0099512 supramolecular fiber 7.14% (6/84) 2.33 0.001284 0.024161
GO:0031969 chloroplast membrane 5.95% (5/84) 2.64 0.001298 0.02421
GO:0032774 RNA biosynthetic process 5.95% (5/84) 2.65 0.001253 0.024273
GO:0008202 steroid metabolic process 5.95% (5/84) 2.64 0.001268 0.024327
GO:0006809 nitric oxide biosynthetic process 2.38% (2/84) 5.16 0.001434 0.025776
GO:0046209 nitric oxide metabolic process 2.38% (2/84) 5.16 0.001434 0.025776
GO:0015979 photosynthesis 3.57% (3/84) 3.76 0.00145 0.025831
GO:0030029 actin filament-based process 4.76% (4/84) 3.05 0.001415 0.025907
GO:0016772 transferase activity, transferring phosphorus-containing groups 15.48% (13/84) 1.37 0.001406 0.025967
GO:0000302 response to reactive oxygen species 8.33% (7/84) 2.06 0.001481 0.026144
GO:1901465 positive regulation of tetrapyrrole biosynthetic process 2.38% (2/84) 5.11 0.001547 0.027068
GO:0030666 endocytic vesicle membrane 3.57% (3/84) 3.72 0.001575 0.027316
GO:0030048 actin filament-based movement 2.38% (2/84) 5.05 0.001663 0.028363
GO:0099080 supramolecular complex 9.52% (8/84) 1.86 0.001656 0.028478
GO:0001845 phagolysosome assembly 2.38% (2/84) 5.0 0.001784 0.030164
GO:0031090 organelle membrane 25.0% (21/84) 0.96 0.0018 0.030174
GO:0016301 kinase activity 14.29% (12/84) 1.4 0.001845 0.030668
GO:1901576 organic substance biosynthetic process 27.38% (23/84) 0.88 0.00218 0.031983
GO:0050242 pyruvate, phosphate dikinase activity 1.19% (1/84) 8.86 0.002149 0.031994
GO:0080047 GDP-L-galactose phosphorylase activity 1.19% (1/84) 8.86 0.002149 0.031994
GO:0006585 dopamine biosynthetic process from tyrosine 1.19% (1/84) 8.86 0.002149 0.031994
GO:0006729 tetrahydrobiopterin biosynthetic process 1.19% (1/84) 8.86 0.002149 0.031994
GO:0046146 tetrahydrobiopterin metabolic process 1.19% (1/84) 8.86 0.002149 0.031994
GO:0008911 lactaldehyde dehydrogenase activity 1.19% (1/84) 8.86 0.002149 0.031994
GO:0140466 iron-sulfur cluster export from the mitochondrion 1.19% (1/84) 8.86 0.002149 0.031994
GO:0140481 ABC-type iron-sulfur cluster transporter activity 1.19% (1/84) 8.86 0.002149 0.031994
GO:1902497 iron-sulfur cluster transmembrane transport 1.19% (1/84) 8.86 0.002149 0.031994
GO:1903331 positive regulation of iron-sulfur cluster assembly 1.19% (1/84) 8.86 0.002149 0.031994
GO:0046608 carotenoid isomerase activity 1.19% (1/84) 8.86 0.002149 0.031994
GO:0010207 photosystem II assembly 2.38% (2/84) 4.86 0.002171 0.032076
GO:0042594 response to starvation 8.33% (7/84) 1.96 0.002233 0.032515
GO:0042995 cell projection 10.71% (9/84) 1.65 0.00227 0.032813
GO:0046459 short-chain fatty acid metabolic process 2.38% (2/84) 4.82 0.002307 0.033117
GO:0048514 blood vessel morphogenesis 2.38% (2/84) 4.91 0.002038 0.033322
GO:1902116 negative regulation of organelle assembly 2.38% (2/84) 4.91 0.002038 0.033322
GO:0048523 negative regulation of cellular process 22.62% (19/84) 1.01 0.002062 0.033444
GO:0007154 cell communication 10.71% (9/84) 1.64 0.002386 0.034006
GO:0050891 multicellular organismal water homeostasis 2.38% (2/84) 4.77 0.002448 0.034639
GO:0008194 UDP-glycosyltransferase activity 7.14% (6/84) 2.13 0.00252 0.035157
GO:0098660 inorganic ion transmembrane transport 7.14% (6/84) 2.13 0.00254 0.035185
GO:0140657 ATP-dependent activity 8.33% (7/84) 1.92 0.002513 0.035303
GO:0010639 negative regulation of organelle organization 4.76% (4/84) 2.81 0.002605 0.035602
GO:0009649 entrainment of circadian clock 2.38% (2/84) 4.73 0.002593 0.035675
GO:0005874 microtubule 5.95% (5/84) 2.4 0.002684 0.036428
GO:0080183 response to photooxidative stress 2.38% (2/84) 4.65 0.002894 0.039014
GO:0080008 Cul4-RING E3 ubiquitin ligase complex 3.57% (3/84) 3.38 0.003065 0.04023
GO:0012510 trans-Golgi network transport vesicle membrane 2.38% (2/84) 4.58 0.003211 0.040292
GO:0032010 phagolysosome 2.38% (2/84) 4.58 0.003211 0.040292
GO:0035435 phosphate ion transmembrane transport 2.38% (2/84) 4.58 0.003211 0.040292
GO:1901403 positive regulation of tetrapyrrole metabolic process 2.38% (2/84) 4.58 0.003211 0.040292
GO:0016773 phosphotransferase activity, alcohol group as acceptor 13.1% (11/84) 1.39 0.003015 0.040363
GO:0051234 establishment of localization 22.62% (19/84) 0.96 0.003064 0.040486
GO:2000035 regulation of stem cell division 2.38% (2/84) 4.61 0.003051 0.040576
GO:0010033 response to organic substance 30.95% (26/84) 0.77 0.003174 0.041118
GO:0051129 negative regulation of cellular component organization 5.95% (5/84) 2.34 0.003154 0.041125
GO:0009267 cellular response to starvation 7.14% (6/84) 2.06 0.003209 0.041297
GO:0006767 water-soluble vitamin metabolic process 3.57% (3/84) 3.34 0.00333 0.041515
GO:0005767 secondary lysosome 2.38% (2/84) 4.54 0.003376 0.041828
GO:0006812 cation transport 8.33% (7/84) 1.84 0.003476 0.042538
GO:0000304 response to singlet oxygen 2.38% (2/84) 4.5 0.003544 0.042589
GO:0010017 red or far-red light signaling pathway 3.57% (3/84) 3.32 0.003467 0.042693
GO:0071489 cellular response to red or far red light 3.57% (3/84) 3.31 0.003537 0.042763
GO:0055028 cortical microtubule 3.57% (3/84) 3.31 0.003537 0.042763
GO:0009411 response to UV 7.14% (6/84) 2.02 0.003731 0.044573
GO:0009639 response to red or far red light 7.14% (6/84) 2.02 0.003758 0.044621
GO:0008928 mannose-1-phosphate guanylyltransferase (GDP) activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0010471 GDP-galactose:mannose-1-phosphate guanylyltransferase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0010472 GDP-galactose:glucose-1-phosphate guanylyltransferase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0010473 GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0080048 GDP-D-glucose phosphorylase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0042416 dopamine biosynthetic process 1.19% (1/84) 7.86 0.004293 0.045804
GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0000010 trans-hexaprenyltranstransferase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0052923 all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0052924 all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0097269 all-trans-decaprenyl-diphosphate synthase activity 1.19% (1/84) 7.86 0.004293 0.045804
GO:0010312 detoxification of zinc ion 1.19% (1/84) 7.86 0.004293 0.045804
GO:0070455 positive regulation of heme biosynthetic process 1.19% (1/84) 7.86 0.004293 0.045804
GO:1903329 regulation of iron-sulfur cluster assembly 1.19% (1/84) 7.86 0.004293 0.045804
GO:1901360 organic cyclic compound metabolic process 28.57% (24/84) 0.79 0.003914 0.045935
GO:0019852 L-ascorbic acid metabolic process 2.38% (2/84) 4.44 0.003892 0.045939
GO:0043168 anion binding 17.86% (15/84) 1.08 0.004329 0.04594
GO:0045335 phagocytic vesicle 3.57% (3/84) 3.19 0.004444 0.046906
GO:1901363 heterocyclic compound binding 38.1% (32/84) 0.62 0.004566 0.047943
GO:0016758 hexosyltransferase activity 7.14% (6/84) 1.96 0.004615 0.048205
GO:0018130 heterocycle biosynthetic process 11.9% (10/84) 1.39 0.004669 0.048516
GO:0006811 ion transport 10.71% (9/84) 1.49 0.004763 0.048977
GO:0042802 identical protein binding 16.67% (14/84) 1.11 0.00474 0.048996
GO:0043436 oxoacid metabolic process 15.48% (13/84) 1.19 0.004264 0.049175
GO:0008299 isoprenoid biosynthetic process 8.33% (7/84) 1.79 0.004243 0.049212
GO:0006796 phosphate-containing compound metabolic process 17.86% (15/84) 1.08 0.004221 0.049243
GO:0031154 culmination involved in sorocarp development 2.38% (2/84) 4.28 0.004828 0.04939
GO:0120025 plasma membrane bounded cell projection 9.52% (8/84) 1.6 0.004892 0.049795
GO:0004672 protein kinase activity 11.9% (10/84) 1.38 0.00495 0.049879
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_89 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_91 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_93 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_144 0.013 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_154 0.007 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_182 0.008 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_232 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_19 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_27 0.009 Orthogroups with 8 Potato genotypes Compare
Solanum tuberosum Agria HCCA Clusters (HRR 50 & PCC 0.5) Cluster_64 0.007 Orthogroups with 8 Potato genotypes Compare
Sequences (84) (download table)

InterPro Domains

GO Terms

Family Terms