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  5. SOLTUB.AGRIA.G00000007601

SOLTUB.AGRIA.G00000007601


Description : Pentatricopeptide repeat-containing protein


Gene families : OG_02_0012995 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007601
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_118


Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEA AHRD
BP GO:0006396 RNA processing IEA AHRD
CC GO:0009536 plastid IEA AHRD
BP GO:0016071 mRNA metabolic process IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000019 regulation of mitotic recombination IEP Predict GO terms from Neighborhoods
MF GO:0000049 tRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening IEP Predict GO terms from Neighborhoods
MF GO:0000404 heteroduplex DNA loop binding IEP Predict GO terms from Neighborhoods
MF GO:0000405 bubble DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0000712 resolution of meiotic recombination intermediates IEP Predict GO terms from Neighborhoods
BP GO:0000713 meiotic heteroduplex formation IEP Predict GO terms from Neighborhoods
CC GO:0000785 chromatin IEP Predict GO terms from Neighborhoods
CC GO:0000795 synaptonemal complex IEP Predict GO terms from Neighborhoods
BP GO:0000959 mitochondrial RNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0000963 mitochondrial RNA processing IEP Predict GO terms from Neighborhoods
BP GO:0000966 RNA 5'-end processing IEP Predict GO terms from Neighborhoods
CC GO:0001650 fibrillar center IEP Predict GO terms from Neighborhoods
CC GO:0001673 male germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0001845 phagolysosome assembly IEP Predict GO terms from Neighborhoods
BP GO:0002200 somatic diversification of immune receptors IEP Predict GO terms from Neighborhoods
BP GO:0002244 hematopoietic progenitor cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0002566 somatic diversification of immune receptors via somatic mutation IEP Predict GO terms from Neighborhoods
BP GO:0002637 regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002639 positive regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002700 regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002702 positive regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002703 regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002705 positive regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002708 positive regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002712 regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002714 positive regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002819 regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002821 positive regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002822 regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002824 positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002889 regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0002891 positive regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0002940 tRNA N2-guanine methylation IEP Predict GO terms from Neighborhoods
MF GO:0003676 nucleic acid binding IEP Predict GO terms from Neighborhoods
MF GO:0003723 RNA binding IEP Predict GO terms from Neighborhoods
MF GO:0004015 adenosylmethionine-8-amino-7-oxononanoate transaminase activity IEP Predict GO terms from Neighborhoods
MF GO:0004016 adenylate cyclase activity IEP Predict GO terms from Neighborhoods
MF GO:0004141 dethiobiotin synthase activity IEP Predict GO terms from Neighborhoods
MF GO:0004709 MAP kinase kinase kinase activity IEP Predict GO terms from Neighborhoods
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0005200 structural constituent of cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0005637 nuclear inner membrane IEP Predict GO terms from Neighborhoods
CC GO:0005712 chiasma IEP Predict GO terms from Neighborhoods
CC GO:0005713 recombination nodule IEP Predict GO terms from Neighborhoods
CC GO:0005715 late recombination nodule IEP Predict GO terms from Neighborhoods
CC GO:0005767 secondary lysosome IEP Predict GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Predict GO terms from Neighborhoods
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Predict GO terms from Neighborhoods
BP GO:0006397 mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0006768 biotin metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0007040 lysosome organization IEP Predict GO terms from Neighborhoods
BP GO:0007060 male meiosis chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0007129 homologous chromosome pairing at meiosis IEP Predict GO terms from Neighborhoods
BP GO:0007260 tyrosine phosphorylation of STAT protein IEP Predict GO terms from Neighborhoods
BP GO:0007276 gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0007283 spermatogenesis IEP Predict GO terms from Neighborhoods
MF GO:0008173 RNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008175 tRNA methyltransferase activity IEP Predict GO terms from Neighborhoods
MF GO:0008483 transaminase activity IEP Predict GO terms from Neighborhoods
BP GO:0008630 intrinsic apoptotic signaling pathway in response to DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0009102 biotin biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009451 RNA modification IEP Predict GO terms from Neighborhoods
BP GO:0009788 negative regulation of abscisic acid-activated signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0009845 seed germination IEP Predict GO terms from Neighborhoods
MF GO:0009975 cyclase activity IEP Predict GO terms from Neighborhoods
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0010344 seed oilbody biogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010422 regulation of brassinosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0010467 gene expression IEP Predict GO terms from Neighborhoods
BP GO:0010893 positive regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0012510 trans-Golgi network transport vesicle membrane IEP Predict GO terms from Neighborhoods
BP GO:0016321 female meiosis chromosome segregation IEP Predict GO terms from Neighborhoods
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0016445 somatic diversification of immunoglobulins IEP Predict GO terms from Neighborhoods
BP GO:0016446 somatic hypermutation of immunoglobulin genes IEP Predict GO terms from Neighborhoods
MF GO:0016462 pyrophosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0016556 mRNA modification IEP Predict GO terms from Neighborhoods
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predict GO terms from Neighborhoods
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predict GO terms from Neighborhoods
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predict GO terms from Neighborhoods
MF GO:0016829 lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016849 phosphorus-oxygen lyase activity IEP Predict GO terms from Neighborhoods
MF GO:0016882 cyclo-ligase activity IEP Predict GO terms from Neighborhoods
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP Predict GO terms from Neighborhoods
BP GO:0030488 tRNA methylation IEP Predict GO terms from Neighborhoods
CC GO:0030658 transport vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030660 Golgi-associated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030662 coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030665 clathrin-coated vesicle membrane IEP Predict GO terms from Neighborhoods
CC GO:0030670 phagocytic vesicle membrane IEP Predict GO terms from Neighborhoods
MF GO:0030983 mismatched DNA binding IEP Predict GO terms from Neighborhoods
BP GO:0031156 regulation of sorocarp development IEP Predict GO terms from Neighborhoods
CC GO:0032010 phagolysosome IEP Predict GO terms from Neighborhoods
BP GO:0032020 ISG15-protein conjugation IEP Predict GO terms from Neighborhoods
MF GO:0032135 DNA insertion or deletion binding IEP Predict GO terms from Neighborhoods
MF GO:0032137 guanine/thymine mispair binding IEP Predict GO terms from Neighborhoods
CC GO:0032300 mismatch repair complex IEP Predict GO terms from Neighborhoods
CC GO:0032389 MutLalpha complex IEP Predict GO terms from Neighborhoods
MF GO:0032404 mismatch repair complex binding IEP Predict GO terms from Neighborhoods
MF GO:0032407 MutSalpha complex binding IEP Predict GO terms from Neighborhoods
BP GO:0032981 mitochondrial respiratory chain complex I assembly IEP Predict GO terms from Neighborhoods
BP GO:0033108 mitochondrial respiratory chain complex assembly IEP Predict GO terms from Neighborhoods
BP GO:0034397 telomere localization IEP Predict GO terms from Neighborhoods
BP GO:0036289 peptidyl-serine autophosphorylation IEP Predict GO terms from Neighborhoods
MF GO:0042296 ISG15 transferase activity IEP Predict GO terms from Neighborhoods
BP GO:0042306 regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0042307 positive regulation of protein import into nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043060 meiotic metaphase I plate congression IEP Predict GO terms from Neighborhoods
CC GO:0043073 germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0043412 macromolecule modification IEP Predict GO terms from Neighborhoods
BP GO:0045132 meiotic chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0045141 meiotic telomere clustering IEP Predict GO terms from Neighborhoods
BP GO:0045191 regulation of isotype switching IEP Predict GO terms from Neighborhoods
CC GO:0045298 tubulin complex IEP Predict GO terms from Neighborhoods
BP GO:0045830 positive regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045879 negative regulation of smoothened signaling pathway IEP Predict GO terms from Neighborhoods
BP GO:0045910 negative regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045911 positive regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0045940 positive regulation of steroid metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0045950 negative regulation of mitotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0046824 positive regulation of nucleocytoplasmic transport IEP Predict GO terms from Neighborhoods
BP GO:0046886 positive regulation of hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0048232 male gamete generation IEP Predict GO terms from Neighborhoods
BP GO:0048296 regulation of isotype switching to IgA isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048298 positive regulation of isotype switching to IgA isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048302 regulation of isotype switching to IgG isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048304 positive regulation of isotype switching to IgG isotypes IEP Predict GO terms from Neighborhoods
BP GO:0048446 petal morphogenesis IEP Predict GO terms from Neighborhoods
BP GO:0050810 regulation of steroid biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0050864 regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050871 positive regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051255 spindle midzone assembly IEP Predict GO terms from Neighborhoods
BP GO:0051257 meiotic spindle midzone assembly IEP Predict GO terms from Neighborhoods
MF GO:0051267 CP2 mannose-ethanolamine phosphotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0051303 establishment of chromosome localization IEP Predict GO terms from Neighborhoods
BP GO:0051310 metaphase plate congression IEP Predict GO terms from Neighborhoods
BP GO:0051311 meiotic metaphase plate congression IEP Predict GO terms from Neighborhoods
MF GO:0051377 mannose-ethanolamine phosphotransferase activity IEP Predict GO terms from Neighborhoods
BP GO:0072702 response to methyl methanesulfonate IEP Predict GO terms from Neighborhoods
BP GO:0080156 mitochondrial mRNA modification IEP Predict GO terms from Neighborhoods
BP GO:0080171 lytic vacuole organization IEP Predict GO terms from Neighborhoods
BP GO:0090030 regulation of steroid hormone biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0090220 chromosome localization to nuclear envelope involved in homologous chromosome segregation IEP Predict GO terms from Neighborhoods
BP GO:0090378 seed trichome elongation IEP Predict GO terms from Neighborhoods
BP GO:0090615 mitochondrial mRNA processing IEP Predict GO terms from Neighborhoods
BP GO:0090617 mitochondrial mRNA 5'-end processing IEP Predict GO terms from Neighborhoods
MF GO:0097159 organic cyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:0098813 nuclear chromosome segregation IEP Predict GO terms from Neighborhoods
CC GO:0099086 synaptonemal structure IEP Predict GO terms from Neighborhoods
BP GO:0140053 mitochondrial gene expression IEP Predict GO terms from Neighborhoods
BP GO:1900182 positive regulation of protein localization to nucleus IEP Predict GO terms from Neighborhoods
BP GO:1900864 mitochondrial RNA modification IEP Predict GO terms from Neighborhoods
MF GO:1901363 heterocyclic compound binding IEP Predict GO terms from Neighborhoods
BP GO:1901420 negative regulation of response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:1902446 regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1902448 positive regulation of shade avoidance IEP Predict GO terms from Neighborhoods
BP GO:1904892 regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:1904894 positive regulation of receptor signaling pathway via STAT IEP Predict GO terms from Neighborhoods
BP GO:1905958 negative regulation of cellular response to alcohol IEP Predict GO terms from Neighborhoods
BP GO:2000030 regulation of response to red or far red light IEP Predict GO terms from Neighborhoods
BP GO:2000035 regulation of stem cell division IEP Predict GO terms from Neighborhoods
BP GO:2000488 positive regulation of brassinosteroid biosynthetic process IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 540 583
IPR002885 Pentatricopeptide_repeat 259 304
IPR002885 Pentatricopeptide_repeat 540 572
IPR002885 Pentatricopeptide_repeat 506 534
IPR002885 Pentatricopeptide_repeat 259 291
IPR002885 Pentatricopeptide_repeat 491 532
IPR002885 Pentatricopeptide_repeat 366 394
IPR002885 Pentatricopeptide_repeat 161 187
IPR002885 Pentatricopeptide_repeat 401 430
IPR011990 TPR-like_helical_dom_sf 148 314
No external refs found!