SOLTUB.AGRIA.G00000007610

Description : Protein COBRA, putative

Gene families : OG_02_0021753 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007610
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_187

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005768	endosome	IEA	AHRD
CC	GO:0005802	trans-Golgi network	IEA	AHRD
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006935	chemotaxis	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009506	plasmodesma	IEA	AHRD
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009664	plant-type cell wall organization	IEA	AHRD
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009832	plant-type cell wall biogenesis	IEA	AHRD
BP	GO:0009860	pollen tube growth	IEA	AHRD
BP	GO:0009932	cell tip growth	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010053	root epidermal cell differentiation	None	Extended
BP	GO:0010183	pollen tube guidance	IEA	AHRD
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
CC	GO:0016324	apical plasma membrane	IEA	AHRD
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	None	Extended
CC	GO:0031226	intrinsic component of plasma membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0040008	regulation of growth	IEA	AHRD
BP	GO:0040011	locomotion	None	Extended
BP	GO:0042330	taxis	None	Extended
BP	GO:0042546	cell wall biogenesis	None	Extended
CC	GO:0042995	cell projection	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
CC	GO:0046658	anchored component of plasma membrane	IEA	AHRD
BP	GO:0048469	cell maturation	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048764	trichoblast maturation	None	Extended
BP	GO:0048765	root hair cell differentiation	IEA	AHRD
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050918	positive chemotaxis	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0090406	pollen tube	IEA	AHRD
BP	GO:0090627	plant epidermal cell differentiation	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
CC	GO:0098791	Golgi apparatus subcompartment	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:0120025	plasma membrane bounded cell projection	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005350	pyrimidine nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005372	water transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005874	microtubule	IEP	Predict GO terms from Neighborhoods
CC	GO:0005881	cytoplasmic microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0006810	transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006833	water transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0007204	positive regulation of cytosolic calcium ion concentration	IEP	Predict GO terms from Neighborhoods
BP	GO:0008064	regulation of actin polymerization or depolymerization	IEP	Predict GO terms from Neighborhoods
MF	GO:0008509	anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008643	carbohydrate transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0008655	pyrimidine-containing compound salvage	IEP	Predict GO terms from Neighborhoods
CC	GO:0010005	cortical microtubule, transverse to long axis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010036	response to boron-containing substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0010215	cellulose microfibril organization	IEP	Predict GO terms from Neighborhoods
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015115	silicate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015168	glycerol transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015204	urea transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015210	uracil transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015250	water channel activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015267	channel activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015698	inorganic anion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015700	arsenite transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015708	silicic acid import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0015791	polyol transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015793	glycerol transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015840	urea transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015850	organic hydroxy compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015851	nucleobase transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016021	integral component of membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0016328	lateral plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0017157	regulation of exocytosis	IEP	Predict GO terms from Neighborhoods
BP	GO:0019755	one-carbon compound transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0022803	passive transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0030198	extracellular matrix organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0030832	regulation of actin filament length	IEP	Predict GO terms from Neighborhoods
BP	GO:0030834	regulation of actin filament depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0031122	cytoplasmic microtubule organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0031969	chloroplast membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0032535	regulation of cellular component size	IEP	Predict GO terms from Neighborhoods
BP	GO:0032956	regulation of actin cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0032970	regulation of actin filament-based process	IEP	Predict GO terms from Neighborhoods
BP	GO:0034219	carbohydrate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042044	fluid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042886	amide transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0042887	amide transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0043062	extracellular structure organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0043094	cellular metabolic compound salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043100	pyrimidine nucleobase salvage	IEP	Predict GO terms from Neighborhoods
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0046685	response to arsenic-containing substance	IEP	Predict GO terms from Neighborhoods
BP	GO:0046713	borate transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0046715	active borate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048226	Casparian strip	IEP	Predict GO terms from Neighborhoods
BP	GO:0050848	regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0050850	positive regulation of calcium-mediated signaling	IEP	Predict GO terms from Neighborhoods
BP	GO:0051046	regulation of secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:0051179	localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051234	establishment of localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051493	regulation of cytoskeleton organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051640	organelle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051648	vesicle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051650	establishment of vesicle localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051656	establishment of organelle localization	IEP	Predict GO terms from Neighborhoods
CC	GO:0055028	cortical microtubule	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0060627	regulation of vesicle-mediated transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071702	organic substance transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071705	nitrogen compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0080029	cellular response to boron-containing substance levels	IEP	Predict GO terms from Neighborhoods
BP	GO:0080170	hydrogen peroxide transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090066	regulation of anatomical structure size	IEP	Predict GO terms from Neighborhoods
BP	GO:0097435	supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0098656	anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098657	import into cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0098658	inorganic anion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0098661	inorganic anion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098739	import across plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0099081	supramolecular polymer	IEP	Predict GO terms from Neighborhoods
CC	GO:0099512	supramolecular fiber	IEP	Predict GO terms from Neighborhoods
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	Predict GO terms from Neighborhoods
BP	GO:0099587	inorganic ion import across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0110053	regulation of actin filament organization	IEP	Predict GO terms from Neighborhoods
MF	GO:1901618	organic hydroxy compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901879	regulation of protein depolymerization	IEP	Predict GO terms from Neighborhoods
BP	GO:1902533	positive regulation of intracellular signal transduction	IEP	Predict GO terms from Neighborhoods
BP	GO:1902903	regulation of supramolecular fiber organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1903530	regulation of secretion by cell	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR006918	COBRA_pln	373	552
IPR000095	CRIB_dom	49	80

External Links

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SOLTUB.AGRIA.G00000007610

Expression Profile

Co-expression Networks

Functional Annotation