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  5. SOLTUB.AGRIA.G00000007716

SOLTUB.AGRIA.G00000007716


Description : 50S ribosomal L15


Gene families : OG_02_0001216 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000007716
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_256


Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA AHRD
BP GO:0008150 biological_process IEA AHRD
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Type GO Term Name Evidence Source
BP GO:0000027 ribosomal large subunit assembly IEP Predict GO terms from Neighborhoods
MF GO:0000287 magnesium ion binding IEP Predict GO terms from Neighborhoods
BP GO:0002181 cytoplasmic translation IEP Predict GO terms from Neighborhoods
MF GO:0003729 mRNA binding IEP Predict GO terms from Neighborhoods
MF GO:0003735 structural constituent of ribosome IEP Predict GO terms from Neighborhoods
MF GO:0005198 structural molecule activity IEP Predict GO terms from Neighborhoods
MF GO:0005507 copper ion binding IEP Predict GO terms from Neighborhoods
MF GO:0005509 calcium ion binding IEP Predict GO terms from Neighborhoods
CC GO:0005840 ribosome IEP Predict GO terms from Neighborhoods
BP GO:0006259 DNA metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006281 DNA repair IEP Predict GO terms from Neighborhoods
BP GO:0006284 base-excision repair IEP Predict GO terms from Neighborhoods
BP GO:0006412 translation IEP Predict GO terms from Neighborhoods
BP GO:0006518 peptide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0006974 cellular response to DNA damage stimulus IEP Predict GO terms from Neighborhoods
BP GO:0007589 body fluid secretion IEP Predict GO terms from Neighborhoods
BP GO:0007595 lactation IEP Predict GO terms from Neighborhoods
BP GO:0009059 macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0009790 embryo development IEP Predict GO terms from Neighborhoods
BP GO:0009792 embryo development ending in birth or egg hatching IEP Predict GO terms from Neighborhoods
BP GO:0010038 response to metal ion IEP Predict GO terms from Neighborhoods
BP GO:0010243 response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0010269 response to selenium ion IEP Predict GO terms from Neighborhoods
CC GO:0014069 postsynaptic density IEP Predict GO terms from Neighborhoods
BP GO:0014074 response to purine-containing compound IEP Predict GO terms from Neighborhoods
CC GO:0015934 large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0016363 nuclear matrix IEP Predict GO terms from Neighborhoods
MF GO:0019843 rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0022618 ribonucleoprotein complex assembly IEP Predict GO terms from Neighborhoods
CC GO:0022625 cytosolic large ribosomal subunit IEP Predict GO terms from Neighborhoods
CC GO:0030425 dendrite IEP Predict GO terms from Neighborhoods
MF GO:0033218 amide binding IEP Predict GO terms from Neighborhoods
BP GO:0034059 response to anoxia IEP Predict GO terms from Neighborhoods
BP GO:0034097 response to cytokine IEP Predict GO terms from Neighborhoods
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predict GO terms from Neighborhoods
CC GO:0035770 ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
BP GO:0036293 response to decreased oxygen levels IEP Predict GO terms from Neighborhoods
CC GO:0036464 cytoplasmic ribonucleoprotein granule IEP Predict GO terms from Neighborhoods
MF GO:0042277 peptide binding IEP Predict GO terms from Neighborhoods
CC GO:0042788 polysomal ribosome IEP Predict GO terms from Neighborhoods
CC GO:0042995 cell projection IEP Predict GO terms from Neighborhoods
CC GO:0043005 neuron projection IEP Predict GO terms from Neighborhoods
BP GO:0043009 chordate embryonic development IEP Predict GO terms from Neighborhoods
BP GO:0043043 peptide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043603 cellular amide metabolic process IEP Predict GO terms from Neighborhoods
BP GO:0043604 amide biosynthetic process IEP Predict GO terms from Neighborhoods
BP GO:0043933 protein-containing complex organization IEP Predict GO terms from Neighborhoods
CC GO:0044391 ribosomal subunit IEP Predict GO terms from Neighborhoods
MF GO:0044877 protein-containing complex binding IEP Predict GO terms from Neighborhoods
BP GO:0046683 response to organophosphorus IEP Predict GO terms from Neighborhoods
BP GO:0046686 response to cadmium ion IEP Predict GO terms from Neighborhoods
BP GO:0046903 secretion IEP Predict GO terms from Neighborhoods
MF GO:0046914 transition metal ion binding IEP Predict GO terms from Neighborhoods
BP GO:0050878 regulation of body fluid levels IEP Predict GO terms from Neighborhoods
BP GO:0051591 response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0065003 protein-containing complex assembly IEP Predict GO terms from Neighborhoods
MF GO:0070180 large ribosomal subunit rRNA binding IEP Predict GO terms from Neighborhoods
BP GO:0070482 response to oxygen levels IEP Predict GO terms from Neighborhoods
BP GO:0070670 response to interleukin-4 IEP Predict GO terms from Neighborhoods
BP GO:0071310 cellular response to organic substance IEP Predict GO terms from Neighborhoods
BP GO:0071320 cellular response to cAMP IEP Predict GO terms from Neighborhoods
BP GO:0071345 cellular response to cytokine stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071353 cellular response to interleukin-4 IEP Predict GO terms from Neighborhoods
BP GO:0071396 cellular response to lipid IEP Predict GO terms from Neighborhoods
BP GO:0071407 cellular response to organic cyclic compound IEP Predict GO terms from Neighborhoods
BP GO:0071417 cellular response to organonitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:0071495 cellular response to endogenous stimulus IEP Predict GO terms from Neighborhoods
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predict GO terms from Neighborhoods
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Predict GO terms from Neighborhoods
BP GO:0097306 cellular response to alcohol IEP Predict GO terms from Neighborhoods
CC GO:0099080 supramolecular complex IEP Predict GO terms from Neighborhoods
CC GO:0099572 postsynaptic specialization IEP Predict GO terms from Neighborhoods
CC GO:0120025 plasma membrane bounded cell projection IEP Predict GO terms from Neighborhoods
BP GO:1901654 response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901655 cellular response to ketone IEP Predict GO terms from Neighborhoods
BP GO:1901699 cellular response to nitrogen compound IEP Predict GO terms from Neighborhoods
BP GO:1901701 cellular response to oxygen-containing compound IEP Predict GO terms from Neighborhoods
BP GO:1904400 response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904401 cellular response to Thyroid stimulating hormone IEP Predict GO terms from Neighborhoods
BP GO:1904587 response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904588 cellular response to glycoprotein IEP Predict GO terms from Neighborhoods
BP GO:1904627 response to phorbol 13-acetate 12-myristate IEP Predict GO terms from Neighborhoods
BP GO:1904628 cellular response to phorbol 13-acetate 12-myristate IEP Predict GO terms from Neighborhoods
CC GO:1990904 ribonucleoprotein complex IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR021131 Ribosomal_L18e/L15P 4 80
IPR013591 Brevis_radix_dom 220 274
IPR036227 L18e/L15P_sf 5 81
No external refs found!