SOLTUB.AGRIA.G00000008135

Description : AP-3 complex subunit sigma

Gene families : OG_02_0013132 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000008135
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_69

Type	GO Term	Name	Evidence	Source
CC	GO:0000139	Golgi membrane	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	None	Extended
CC	GO:0005765	lysosomal membrane	IEA	AHRD
CC	GO:0005768	endosome	IEA	AHRD
CC	GO:0005774	vacuolar membrane	None	Extended
CC	GO:0005829	cytosol	IEA	AHRD
CC	GO:0005905	clathrin-coated pit	IEA	AHRD
CC	GO:0005938	cell cortex	IEA	AHRD
BP	GO:0006605	protein targeting	None	Extended
BP	GO:0006623	protein targeting to vacuole	IEA	AHRD
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	None	Extended
BP	GO:0006892	post-Golgi vesicle-mediated transport	None	Extended
BP	GO:0006896	Golgi to vacuole transport	IEA	AHRD
BP	GO:0006897	endocytosis	None	Extended
BP	GO:0006898	receptor-mediated endocytosis	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007018	microtubule-based movement	None	Extended
BP	GO:0007034	vacuolar transport	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	None	Extended
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	None	Extended
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	None	Extended
BP	GO:0008088	axo-dendritic transport	None	Extended
BP	GO:0008089	anterograde axonal transport	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008286	insulin receptor signaling pathway	IEA	AHRD
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010970	transport along microtubule	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0016197	endosomal transport	None	Extended
BP	GO:0016482	cytosolic transport	None	Extended
CC	GO:0030119	AP-type membrane coat adaptor complex	None	Extended
CC	GO:0030121	AP-1 adaptor complex	IEA	AHRD
CC	GO:0030123	AP-3 adaptor complex	IEA	AHRD
CC	GO:0030131	clathrin adaptor complex	None	Extended
MF	GO:0030276	clathrin binding	None	Extended
MF	GO:0030674	protein-macromolecule adaptor activity	None	Extended
BP	GO:0030705	cytoskeleton-dependent intracellular transport	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
CC	GO:0031410	cytoplasmic vesicle	None	Extended
CC	GO:0031982	vesicle	None	Extended
CC	GO:0032588	trans-Golgi network membrane	IEA	AHRD
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0033365	protein localization to organelle	None	Extended
MF	GO:0035615	clathrin adaptor activity	IEA	AHRD
BP	GO:0042147	retrograde transport, endosome to Golgi	IEA	AHRD
CC	GO:0043195	terminal bouton	IEA	AHRD
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0047496	vesicle transport along microtubule	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0048489	synaptic vesicle transport	None	Extended
BP	GO:0048490	anterograde synaptic vesicle transport	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051640	organelle localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051648	vesicle localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0051650	establishment of vesicle localization	None	Extended
BP	GO:0051656	establishment of organelle localization	None	Extended
BP	GO:0051707	response to other organism	None	Extended
MF	GO:0060090	molecular adaptor activity	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0072384	organelle transport along microtubule	None	Extended
BP	GO:0072583	clathrin-dependent endocytosis	IEA	AHRD
BP	GO:0072594	establishment of protein localization to organelle	None	Extended
BP	GO:0072665	protein localization to vacuole	None	Extended
BP	GO:0072666	establishment of protein localization to vacuole	None	Extended
BP	GO:0097479	synaptic vesicle localization	None	Extended
CC	GO:0097708	intracellular vesicle	None	Extended
CC	GO:0098588	bounding membrane of organelle	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
CC	GO:0098793	presynapse	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098852	lytic vacuole membrane	None	Extended
BP	GO:0098930	axonal transport	None	Extended
BP	GO:0099111	microtubule-based transport	None	Extended
BP	GO:0099514	synaptic vesicle cytoskeletal transport	None	Extended
BP	GO:0099517	synaptic vesicle transport along microtubule	None	Extended
BP	GO:0099518	vesicle cytoskeletal trafficking	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140312	cargo adaptor activity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005622	intracellular anatomical structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0009579	thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0016567	protein ubiquitination	IEP	Predict GO terms from Neighborhoods
CC	GO:0018995	host cellular component	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
CC	GO:0031977	thylakoid lumen	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0032446	protein modification by small protein conjugation	IEP	Predict GO terms from Neighborhoods
MF	GO:0043621	protein self-association	IEP	Predict GO terms from Neighborhoods
CC	GO:0043657	host cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0043933	protein-containing complex organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051259	protein complex oligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0051260	protein homooligomerization	IEP	Predict GO terms from Neighborhoods
BP	GO:0065003	protein-containing complex assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Predict GO terms from Neighborhoods
MF	GO:0097602	cullin family protein binding	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR022775	AP_mu_sigma_su	1	147
IPR011012	Longin-like_dom_sf	1	145

External Links

No external refs found!

SOLTUB.AGRIA.G00000008135

Expression Profile

Co-expression Networks

Functional Annotation