SOLTUB.AGRIA.G00000009144


Description : DNA repair helicase rad5,16, putative


Gene families : OG_02_0008268 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009144
Cluster HCCA Clusters (HRR 50 & PCC 0.5): Cluster_73


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA AHRD
MF GO:0004386 helicase activity IEA AHRD
MF GO:0005524 ATP binding IEA AHRD
CC GO:0005654 nucleoplasm IEA AHRD
CC GO:0005694 chromosome IEA AHRD
CC GO:0005730 nucleolus IEA AHRD
BP GO:0006325 chromatin organization IEA AHRD
MF GO:0008094 ATP-dependent activity, acting on DNA IEA AHRD
MF GO:0008270 zinc ion binding IEA AHRD
BP GO:0009294 DNA-mediated transformation IEA AHRD
CC GO:0009941 chloroplast envelope IEA AHRD
BP GO:0016567 protein ubiquitination IEA AHRD
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA AHRD
BP GO:0019985 translesion synthesis IEA AHRD
MF GO:0031625 ubiquitin protein ligase binding IEA AHRD
BP GO:0036297 interstrand cross-link repair IEA AHRD
BP GO:0045003 double-strand break repair via synthesis-dependent strand annealing IEA AHRD
BP GO:0045944 positive regulation of transcription by RNA polymerase II IEA AHRD
MF GO:0061630 ubiquitin protein ligase activity IEA AHRD
Type GO Term Name Evidence Source
BP GO:0000018 regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predict GO terms from Neighborhoods
BP GO:0000280 nuclear division IEP Predict GO terms from Neighborhoods
CC GO:0000307 cyclin-dependent protein kinase holoenzyme complex IEP Predict GO terms from Neighborhoods
BP GO:0000712 resolution of meiotic recombination intermediates IEP Predict GO terms from Neighborhoods
BP GO:0000729 DNA double-strand break processing IEP Predict GO terms from Neighborhoods
CC GO:0001673 male germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0001775 cell activation IEP Predict GO terms from Neighborhoods
BP GO:0002200 somatic diversification of immune receptors IEP Predict GO terms from Neighborhoods
BP GO:0002204 somatic recombination of immunoglobulin genes involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002208 somatic diversification of immunoglobulins involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002250 adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002263 cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002285 lymphocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002312 B cell activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002366 leukocyte activation involved in immune response IEP Predict GO terms from Neighborhoods
BP GO:0002443 leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002449 lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002455 humoral immune response mediated by circulating immunoglobulin IEP Predict GO terms from Neighborhoods
BP GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002562 somatic diversification of immune receptors via germline recombination within a single locus IEP Predict GO terms from Neighborhoods
BP GO:0002566 somatic diversification of immune receptors via somatic mutation IEP Predict GO terms from Neighborhoods
BP GO:0002637 regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002639 positive regulation of immunoglobulin production IEP Predict GO terms from Neighborhoods
BP GO:0002694 regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002696 positive regulation of leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0002697 regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002699 positive regulation of immune effector process IEP Predict GO terms from Neighborhoods
BP GO:0002700 regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002702 positive regulation of production of molecular mediator of immune response IEP Predict GO terms from Neighborhoods
BP GO:0002703 regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002705 positive regulation of leukocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002706 regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002708 positive regulation of lymphocyte mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002712 regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002714 positive regulation of B cell mediated immunity IEP Predict GO terms from Neighborhoods
BP GO:0002819 regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002821 positive regulation of adaptive immune response IEP Predict GO terms from Neighborhoods
BP GO:0002822 regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002824 positive regulation of adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains IEP Predict GO terms from Neighborhoods
BP GO:0002889 regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0002891 positive regulation of immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
MF GO:0003774 cytoskeletal motor activity IEP Predict GO terms from Neighborhoods
MF GO:0003777 microtubule motor activity IEP Predict GO terms from Neighborhoods
MF GO:0004520 endodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004527 exonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004529 exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0004536 deoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0006261 DNA-templated DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0006298 mismatch repair IEP Predict GO terms from Neighborhoods
BP GO:0006312 mitotic recombination IEP Predict GO terms from Neighborhoods
BP GO:0006959 humoral immune response IEP Predict GO terms from Neighborhoods
BP GO:0007093 mitotic cell cycle checkpoint signaling IEP Predict GO terms from Neighborhoods
BP GO:0007097 nuclear migration IEP Predict GO terms from Neighborhoods
BP GO:0007135 meiosis II IEP Predict GO terms from Neighborhoods
BP GO:0007140 male meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0007346 regulation of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0007534 gene conversion at mating-type locus IEP Predict GO terms from Neighborhoods
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008309 double-stranded DNA exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008409 5'-3' exonuclease activity IEP Predict GO terms from Neighborhoods
MF GO:0008569 minus-end-directed microtubule motor activity IEP Predict GO terms from Neighborhoods
BP GO:0009060 aerobic respiration IEP Predict GO terms from Neighborhoods
BP GO:0009556 microsporogenesis IEP Predict GO terms from Neighborhoods
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0010444 guard mother cell differentiation IEP Predict GO terms from Neighborhoods
BP GO:0010564 regulation of cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0010972 negative regulation of G2/M transition of mitotic cell cycle IEP Predict GO terms from Neighborhoods
CC GO:0015629 actin cytoskeleton IEP Predict GO terms from Neighborhoods
CC GO:0015630 microtubule cytoskeleton IEP Predict GO terms from Neighborhoods
BP GO:0016064 immunoglobulin mediated immune response IEP Predict GO terms from Neighborhoods
BP GO:0016444 somatic cell DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0016445 somatic diversification of immunoglobulins IEP Predict GO terms from Neighborhoods
BP GO:0016446 somatic hypermutation of immunoglobulin genes IEP Predict GO terms from Neighborhoods
BP GO:0016447 somatic recombination of immunoglobulin gene segments IEP Predict GO terms from Neighborhoods
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP Predict GO terms from Neighborhoods
CC GO:0016604 nuclear body IEP Predict GO terms from Neighborhoods
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Predict GO terms from Neighborhoods
CC GO:0019005 SCF ubiquitin ligase complex IEP Predict GO terms from Neighborhoods
MF GO:0019207 kinase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0019724 B cell mediated immunity IEP Predict GO terms from Neighborhoods
MF GO:0019887 protein kinase regulator activity IEP Predict GO terms from Neighborhoods
BP GO:0022402 cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Predict GO terms from Neighborhoods
BP GO:0022616 DNA strand elongation IEP Predict GO terms from Neighborhoods
BP GO:0031062 positive regulation of histone methylation IEP Predict GO terms from Neighborhoods
BP GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEP Predict GO terms from Neighborhoods
BP GO:0031399 regulation of protein modification process IEP Predict GO terms from Neighborhoods
CC GO:0031422 RecQ family helicase-topoisomerase III complex IEP Predict GO terms from Neighborhoods
BP GO:0031534 minus-end directed microtubule sliding IEP Predict GO terms from Neighborhoods
BP GO:0031860 telomeric 3' overhang formation IEP Predict GO terms from Neighborhoods
CC GO:0032991 protein-containing complex IEP Predict GO terms from Neighborhoods
CC GO:0034708 methyltransferase complex IEP Predict GO terms from Neighborhoods
CC GO:0035097 histone methyltransferase complex IEP Predict GO terms from Neighborhoods
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0035556 intracellular signal transduction IEP Predict GO terms from Neighborhoods
BP GO:0035822 gene conversion IEP Predict GO terms from Neighborhoods
BP GO:0035825 homologous recombination IEP Predict GO terms from Neighborhoods
CC GO:0035861 site of double-strand break IEP Predict GO terms from Neighborhoods
BP GO:0042023 DNA endoreduplication IEP Predict GO terms from Neighborhoods
BP GO:0042113 B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0042770 signal transduction in response to DNA damage IEP Predict GO terms from Neighborhoods
CC GO:0043073 germ cell nucleus IEP Predict GO terms from Neighborhoods
BP GO:0044786 cell cycle DNA replication IEP Predict GO terms from Neighborhoods
BP GO:0044818 mitotic G2/M transition checkpoint IEP Predict GO terms from Neighborhoods
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0045190 isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045191 regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045321 leukocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0045333 cellular respiration IEP Predict GO terms from Neighborhoods
BP GO:0045830 positive regulation of isotype switching IEP Predict GO terms from Neighborhoods
BP GO:0045911 positive regulation of DNA recombination IEP Predict GO terms from Neighborhoods
BP GO:0046649 lymphocyte activation IEP Predict GO terms from Neighborhoods
MF GO:0048256 flap endonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0048285 organelle fission IEP Predict GO terms from Neighborhoods
BP GO:0050864 regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050865 regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050867 positive regulation of cell activation IEP Predict GO terms from Neighborhoods
BP GO:0050871 positive regulation of B cell activation IEP Predict GO terms from Neighborhoods
BP GO:0051012 microtubule sliding IEP Predict GO terms from Neighborhoods
BP GO:0051240 positive regulation of multicellular organismal process IEP Predict GO terms from Neighborhoods
BP GO:0051249 regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051251 positive regulation of lymphocyte activation IEP Predict GO terms from Neighborhoods
BP GO:0051445 regulation of meiotic cell cycle IEP Predict GO terms from Neighborhoods
BP GO:0051647 nucleus localization IEP Predict GO terms from Neighborhoods
BP GO:0051726 regulation of cell cycle IEP Predict GO terms from Neighborhoods
MF GO:0051908 double-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Predict GO terms from Neighborhoods
BP GO:0055047 generative cell mitosis IEP Predict GO terms from Neighborhoods
BP GO:0061982 meiosis I cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:0061983 meiosis II cell cycle process IEP Predict GO terms from Neighborhoods
CC GO:0090734 site of DNA damage IEP Predict GO terms from Neighborhoods
BP GO:0140013 meiotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:0140014 mitotic nuclear division IEP Predict GO terms from Neighborhoods
BP GO:1901987 regulation of cell cycle phase transition IEP Predict GO terms from Neighborhoods
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Predict GO terms from Neighborhoods
CC GO:1902494 catalytic complex IEP Predict GO terms from Neighborhoods
CC GO:1902554 serine/threonine protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
BP GO:1902750 negative regulation of cell cycle G2/M phase transition IEP Predict GO terms from Neighborhoods
CC GO:1902911 protein kinase complex IEP Predict GO terms from Neighborhoods
BP GO:1903046 meiotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1903047 mitotic cell cycle process IEP Predict GO terms from Neighborhoods
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predict GO terms from Neighborhoods
BP GO:1905634 regulation of protein localization to chromatin IEP Predict GO terms from Neighborhoods
CC GO:1990234 transferase complex IEP Predict GO terms from Neighborhoods
BP GO:2000038 regulation of stomatal complex development IEP Predict GO terms from Neighborhoods
BP GO:2000123 positive regulation of stomatal complex development IEP Predict GO terms from Neighborhoods
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 904 943
IPR027417 P-loop_NTPase 787 1128
IPR000330 SNF2_N 483 852
IPR001650 Helicase_C 974 1086
IPR027417 P-loop_NTPase 467 773
IPR009060 UBA-like_sf 10 55
IPR014905 HIRAN 250 354
No external refs found!