SOLTUB.AGRIA.G00000009159

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein

Gene families : OG_02_0013389 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009159
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_139

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008289	lipid binding	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010431	seed maturation	IEA	AHRD
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0019863	IgE binding	IEA	AHRD
MF	GO:0019865	immunoglobulin binding	None	Extended
BP	GO:0021700	developmental maturation	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030695	GTPase regulator activity	None	Extended
BP	GO:0032502	developmental process	None	Extended
MF	GO:0035091	phosphatidylinositol binding	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043245	extraorganismal space	IEA	AHRD
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0045735	nutrient reservoir activity	IEA	AHRD
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0051259	protein complex oligomerization	None	Extended
BP	GO:0051260	protein homooligomerization	None	Extended
MF	GO:0060589	nucleoside-triphosphatase regulator activity	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0070206	protein trimerization	None	Extended
BP	GO:0070207	protein homotrimerization	IEA	AHRD
MF	GO:0070300	phosphatidic acid binding	IEA	AHRD
BP	GO:0071695	anatomical structure maturation	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000323	lytic vacuole	IEP	Predict GO terms from Neighborhoods
CC	GO:0000325	plant-type vacuole	IEP	Predict GO terms from Neighborhoods
MF	GO:0001216	DNA-binding transcription activator activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	IEP	Predict GO terms from Neighborhoods
MF	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004175	endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004303	estradiol 17-beta-dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004312	fatty acid synthase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005615	extracellular space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005764	lysosome	IEP	Predict GO terms from Neighborhoods
CC	GO:0005811	lipid droplet	IEP	Predict GO terms from Neighborhoods
BP	GO:0006624	vacuolar protein processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0006950	response to stress	IEP	Predict GO terms from Neighborhoods
BP	GO:0008037	cell recognition	IEP	Predict GO terms from Neighborhoods
MF	GO:0008233	peptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008284	positive regulation of cell population proliferation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009534	chloroplast thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0009627	systemic acquired resistance	IEP	Predict GO terms from Neighborhoods
BP	GO:0009628	response to abiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009845	seed germination	IEP	Predict GO terms from Neighborhoods
BP	GO:0009908	flower development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010115	regulation of abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010116	positive regulation of abscisic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010198	synergid death	IEP	Predict GO terms from Neighborhoods
BP	GO:0010234	anther wall tapetum cell fate specification	IEP	Predict GO terms from Neighborhoods
BP	GO:0010262	somatic embryogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0010282	senescence-associated vacuole	IEP	Predict GO terms from Neighborhoods
BP	GO:0010344	seed oilbody biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010371	regulation of gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010373	negative regulation of gibberellin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010581	regulation of starch biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010600	regulation of auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010601	positive regulation of auxin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010623	programmed cell death involved in cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0010712	regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010714	positive regulation of collagen metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0012501	programmed cell death	IEP	Predict GO terms from Neighborhoods
CC	GO:0012511	monolayer-surrounded lipid storage body	IEP	Predict GO terms from Neighborhoods
BP	GO:0014015	positive regulation of gliogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0015858	nucleoside transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0016098	monoterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016099	monoterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016101	diterpenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0016102	diterpenoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016229	steroid dehydrogenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016297	acyl-[acyl-carrier-protein] hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016790	thiolester hydrolase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019216	regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019747	regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019915	lipid storage	IEP	Predict GO terms from Neighborhoods
BP	GO:0031099	regeneration	IEP	Predict GO terms from Neighborhoods
CC	GO:0031523	Myb complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0031976	plastid thylakoid	IEP	Predict GO terms from Neighborhoods
BP	GO:0032350	regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032352	positive regulation of hormone metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032501	multicellular organismal process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032965	regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0032967	positive regulation of collagen biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0033095	aleurone grain	IEP	Predict GO terms from Neighborhoods
MF	GO:0033764	steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0034389	lipid droplet organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0034587	piRNA metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0035295	tube development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042304	regulation of fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042735	protein body	IEP	Predict GO terms from Neighborhoods
BP	GO:0043370	regulation of CD4-positive, alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0043372	positive regulation of CD4-positive, alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0043668	exine	IEP	Predict GO terms from Neighborhoods
BP	GO:0044085	cellular component biogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0044594	17-beta-hydroxysteroid dehydrogenase (NAD+) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0045169	fusome	IEP	Predict GO terms from Neighborhoods
BP	GO:0045487	gibberellin catabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0045580	regulation of T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045582	positive regulation of T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045621	positive regulation of lymphocyte differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045622	regulation of T-helper cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045624	positive regulation of T-helper cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045691	regulation of embryo sac central cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045697	regulation of synergid differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045723	positive regulation of fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045827	negative regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045828	positive regulation of isoprenoid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045833	negative regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045834	positive regulation of lipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045923	positive regulation of fatty acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045995	regulation of embryonic development	IEP	Predict GO terms from Neighborhoods
BP	GO:0046634	regulation of alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046635	positive regulation of alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046637	regulation of alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046638	positive regulation of alpha-beta T cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046886	positive regulation of hormone biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046889	positive regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046890	regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048145	regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048146	positive regulation of fibroblast proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0048367	shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048536	spleen development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048538	thymus development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048544	recognition of pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0048565	digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048566	embryonic digestive tract development	IEP	Predict GO terms from Neighborhoods
BP	GO:0050826	response to freezing	IEP	Predict GO terms from Neighborhoods
BP	GO:0050896	response to stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0051055	negative regulation of lipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0051235	maintenance of location	IEP	Predict GO terms from Neighborhoods
BP	GO:0051512	positive regulation of unidimensional cell growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055089	fatty acid homeostasis	IEP	Predict GO terms from Neighborhoods
BP	GO:0060251	regulation of glial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060252	positive regulation of glial cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060320	rejection of self pollen	IEP	Predict GO terms from Neighborhoods
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062013	positive regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0062014	negative regulation of small molecule metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0070524	11-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070645	Ubisch body	IEP	Predict GO terms from Neighborhoods
BP	GO:0070741	response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071300	cellular response to retinoic acid	IEP	Predict GO terms from Neighborhoods
BP	GO:0071354	cellular response to interleukin-6	IEP	Predict GO terms from Neighborhoods
BP	GO:0071465	cellular response to desiccation	IEP	Predict GO terms from Neighborhoods
BP	GO:0071634	regulation of transforming growth factor beta production	IEP	Predict GO terms from Neighborhoods
BP	GO:0071636	positive regulation of transforming growth factor beta production	IEP	Predict GO terms from Neighborhoods
MF	GO:0072582	17-beta-hydroxysteroid dehydrogenase (NADP+) activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0090354	regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090355	positive regulation of auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090567	reproductive shoot system development	IEP	Predict GO terms from Neighborhoods
BP	GO:1901533	negative regulation of hematopoietic progenitor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:1901642	nucleoside transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1902075	cellular response to salt	IEP	Predict GO terms from Neighborhoods
BP	GO:1902930	regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1902932	positive regulation of alcohol biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904095	negative regulation of endosperm development	IEP	Predict GO terms from Neighborhoods
BP	GO:1904897	regulation of hepatic stellate cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1904899	positive regulation of hepatic stellate cell proliferation	IEP	Predict GO terms from Neighborhoods
BP	GO:1990019	protein storage vacuole organization	IEP	Predict GO terms from Neighborhoods
BP	GO:1990511	piRNA biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1990823	response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:1990830	cellular response to leukemia inhibitory factor	IEP	Predict GO terms from Neighborhoods
BP	GO:2000489	regulation of hepatic stellate cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000491	positive regulation of hepatic stellate cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000514	regulation of CD4-positive, alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000516	positive regulation of CD4-positive, alpha-beta T cell activation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000692	negative regulation of seed maturation	IEP	Predict GO terms from Neighborhoods
BP	GO:2000843	regulation of testosterone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:2000845	positive regulation of testosterone secretion	IEP	Predict GO terms from Neighborhoods
BP	GO:2001279	regulation of unsaturated fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:2001280	positive regulation of unsaturated fatty acid biosynthetic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR027988	BRX_N	834	867
IPR000408	Reg_chr_condens	522	568
IPR000408	Reg_chr_condens	354	403
IPR000408	Reg_chr_condens	419	463
IPR000408	Reg_chr_condens	248	296
IPR000408	Reg_chr_condens	300	350
IPR000408	Reg_chr_condens	468	517
IPR013591	Brevis_radix_dom	962	993
IPR009091	RCC1/BLIP-II	188	574
IPR011011	Znf_FYVE_PHD	573	646
IPR006045	Cupin_1	1024	1163
IPR006045	Cupin_1	1282	1428
IPR000306	Znf_FYVE	573	639
IPR011051	RmlC_Cupin_sf	998	1437

External Links

No external refs found!

SOLTUB.AGRIA.G00000009159

Expression Profile

Co-expression Networks

Functional Annotation