SOLTUB.AGRIA.G00000009168

Description : 3-isopropylmalate dehydratase large subunit

Gene families : OG_02_0008271 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009168
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_260

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006551	leucine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009081	branched-chain amino acid metabolic process	None	Extended
BP	GO:0009082	branched-chain amino acid biosynthetic process	None	Extended
BP	GO:0009098	leucine biosynthetic process	IEA	AHRD
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009570	chloroplast stroma	IEA	AHRD
BP	GO:0009820	alkaloid metabolic process	None	Extended
BP	GO:0009822	alkaloid catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016836	hydro-lyase activity	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0046872	metal ion binding	IEA	AHRD
MF	GO:0047868	dimethylmaleate hydratase activity	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
BP	GO:0072524	pyridine-containing compound metabolic process	None	Extended
BP	GO:0072526	pyridine-containing compound catabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended
BP	GO:1901847	nicotinate metabolic process	None	Extended
BP	GO:1901848	nicotinate catabolic process	IEA	AHRD

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Type	GO Term	Name	Evidence	Source
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Predict GO terms from Neighborhoods
MF	GO:0003852	2-isopropylmalate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004177	aminopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005215	transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Predict GO terms from Neighborhoods
CC	GO:0005929	cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Predict GO terms from Neighborhoods
BP	GO:0006650	glycerophospholipid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006811	ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006812	cation transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0008121	ubiquinol-cytochrome-c reductase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008235	metalloexopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008237	metallopeptidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008238	exopeptidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008291	acetylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0008292	acetylcholine biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0008654	phospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0009055	electron transfer activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009060	aerobic respiration	IEP	Predict GO terms from Neighborhoods
CC	GO:0009526	plastid envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0009527	plastid outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009625	response to insect	IEP	Predict GO terms from Neighborhoods
BP	GO:0009704	de-etiolation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009707	chloroplast outer membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0009850	auxin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009877	nodulation	IEP	Predict GO terms from Neighborhoods
CC	GO:0009941	chloroplast envelope	IEP	Predict GO terms from Neighborhoods
MF	GO:0010177	2-(2'-methylthio)ethylmalate synthase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015101	organic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015220	choline transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015234	thiamine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015605	organophosphate ester transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015651	quaternary ammonium group transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015695	organic cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015697	quaternary ammonium group transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015748	organophosphate ester transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015870	acetylcholine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015871	choline transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015888	thiamine transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Predict GO terms from Neighborhoods
BP	GO:0016144	S-glycoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0016405	CoA-ligase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016878	acid-thiol ligase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0019646	aerobic electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0019758	glycosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019761	glucosinolate biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0019867	outer membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0022857	transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0022900	electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0022904	respiratory electron transport chain	IEP	Predict GO terms from Neighborhoods
BP	GO:0023061	signal release	IEP	Predict GO terms from Neighborhoods
BP	GO:0030307	positive regulation of cell growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0030974	thiamine pyrophosphate transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0031090	organelle membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031967	organelle envelope	IEP	Predict GO terms from Neighborhoods
CC	GO:0031968	organelle outer membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0031975	envelope	IEP	Predict GO terms from Neighborhoods
BP	GO:0032204	regulation of telomere maintenance	IEP	Predict GO terms from Neighborhoods
BP	GO:0032386	regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032388	positive regulation of intracellular transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0032475	otolith formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0032940	secretion by cell	IEP	Predict GO terms from Neighborhoods
BP	GO:0033157	regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0033762	response to glucagon	IEP	Predict GO terms from Neighborhoods
BP	GO:0034220	ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0034764	positive regulation of transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035461	vitamin transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0035675	neuromast hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0042133	neurotransmitter metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042136	neurotransmitter biosynthetic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0042170	plastid membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0043434	response to peptide hormone	IEP	Predict GO terms from Neighborhoods
MF	GO:0044183	protein folding chaperone	IEP	Predict GO terms from Neighborhoods
BP	GO:0045017	glycerolipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045117	azole transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0045275	respiratory chain complex III	IEP	Predict GO terms from Neighborhoods
BP	GO:0045333	cellular respiration	IEP	Predict GO terms from Neighborhoods
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0046912	acyltransferase activity, acyl groups converted into alkyl on transfer	IEP	Predict GO terms from Neighborhoods
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048666	neuron development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048840	otolith development	IEP	Predict GO terms from Neighborhoods
BP	GO:0051180	vitamin transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0051222	positive regulation of protein transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0055085	transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0061077	chaperone-mediated protein folding	IEP	Predict GO terms from Neighborhoods
BP	GO:0061526	acetylcholine secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0070006	metalloaminopeptidase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0070069	cytochrome complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071934	thiamine transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072348	sulfur compound transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0072531	pyrimidine-containing compound transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0090422	thiamine pyrophosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0090482	vitamin transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Predict GO terms from Neighborhoods
CC	GO:0098803	respiratory chain complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1900619	acetate ester metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1900620	acetate ester biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901374	acetate ester transport	IEP	Predict GO terms from Neighborhoods
MF	GO:1901474	azole transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:1901682	sulfur compound transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:1902495	transmembrane transporter complex	IEP	Predict GO terms from Neighborhoods
BP	GO:1902600	proton transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:1903533	regulation of protein targeting	IEP	Predict GO terms from Neighborhoods
BP	GO:1903829	positive regulation of protein localization	IEP	Predict GO terms from Neighborhoods
BP	GO:1904215	regulation of protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:1904216	positive regulation of protein import into chloroplast stroma	IEP	Predict GO terms from Neighborhoods
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Predict GO terms from Neighborhoods
CC	GO:1990204	oxidoreductase complex	IEP	Predict GO terms from Neighborhoods
CC	GO:1990351	transporter complex	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR001030	Acoase/IPM_deHydtase_lsu_aba	89	499
IPR006251	Homoacnase/IPMdehydase_lsu	68	505
IPR036008	Aconitase_4Fe-4S_dom	58	507

External Links

No external refs found!

SOLTUB.AGRIA.G00000009168

Expression Profile

Co-expression Networks

Functional Annotation