Description : E3 ubiquitin-protein ligase
Gene families : OG_02_0043097 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009562 | |
| Cluster | HCCA Clusters (HRR 50 & PCC 0.5): Cluster_171 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0005737 | cytoplasm | IEA | AHRD |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEA | AHRD |
| MF | GO:0008270 | zinc ion binding | IEA | AHRD |
| BP | GO:0016567 | protein ubiquitination | IEA | AHRD |
| MF | GO:0016740 | transferase activity | IEA | AHRD |
| MF | GO:0046872 | metal ion binding | IEA | AHRD |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005681 | spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005684 | U2-type spliceosomal complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0005685 | U1 snRNP | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0006397 | mRNA processing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0007010 | cytoskeleton organization | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008360 | regulation of cell shape | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0008380 | RNA splicing | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0010564 | regulation of cell cycle process | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016363 | nuclear matrix | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0016477 | cell migration | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016592 | mediator complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016604 | nuclear body | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0016607 | nuclear speck | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0022604 | regulation of cell morphogenesis | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0030532 | small nuclear ribonucleoprotein complex | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0032465 | regulation of cytokinesis | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0045292 | mRNA cis splicing, via spliceosome | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0048870 | cell motility | IEP | Predict GO terms from Neighborhoods |
| BP | GO:0051302 | regulation of cell division | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071004 | U2-type prespliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071010 | prespliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0071011 | precatalytic spliceosome | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0097525 | spliceosomal snRNP complex | IEP | Predict GO terms from Neighborhoods |
| CC | GO:0120114 | Sm-like protein family complex | IEP | Predict GO terms from Neighborhoods |
No InterPro domains available for this sequence
| No external refs found! |