SOLTUB.AGRIA.G00000009837

Description : Pectate lyase

Gene families : OG_02_0022314 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009837
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_108

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009624	response to nematode	IEA	AHRD
BP	GO:0009664	plant-type cell wall organization	IEA	AHRD
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010393	galacturonan metabolic process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	IEA	AHRD
CC	GO:0031224	intrinsic component of membrane	None	Extended
CC	GO:0031225	anchored component of membrane	IEA	AHRD
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045488	pectin metabolic process	None	Extended
BP	GO:0045490	pectin catabolic process	IEA	AHRD
MF	GO:0046872	metal ion binding	IEA	AHRD
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004430	1-phosphatidylinositol 4-kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Predict GO terms from Neighborhoods
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004575	sucrose alpha-glucosidase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004672	protein kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005313	L-glutamate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005356	glucose:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005358	high-affinity glucose:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0005507	copper ion binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0005576	extracellular region	IEP	Predict GO terms from Neighborhoods
CC	GO:0005615	extracellular space	IEP	Predict GO terms from Neighborhoods
CC	GO:0005618	cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0005886	plasma membrane	IEP	Predict GO terms from Neighborhoods
CC	GO:0005911	cell-cell junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0005987	sucrose catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006020	inositol metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006063	uronic acid metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006812	cation transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006813	potassium ion transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0006885	regulation of pH	IEP	Predict GO terms from Neighborhoods
MF	GO:0008199	ferric iron binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008506	sucrose:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0008553	P-type proton-exporting transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0009505	plant-type cell wall	IEP	Predict GO terms from Neighborhoods
CC	GO:0009506	plasmodesma	IEP	Predict GO terms from Neighborhoods
MF	GO:0009669	sucrose:cation symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0009679	hexose:proton symporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0009932	cell tip growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0010191	mucilage metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0012505	endomembrane system	IEP	Predict GO terms from Neighborhoods
BP	GO:0014706	striated muscle tissue development	IEP	Predict GO terms from Neighborhoods
MF	GO:0015075	ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015180	L-alanine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015183	L-aspartate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015293	symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015556	C4-dicarboxylate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0015578	mannose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0015751	arabinose transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015802	basic amino acid transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0015808	L-alanine transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0016020	membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0016301	kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predict GO terms from Neighborhoods
MF	GO:0016787	hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predict GO terms from Neighborhoods
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Predict GO terms from Neighborhoods
BP	GO:0019310	inositol catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019586	galacturonate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019853	L-ascorbic acid biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0022804	active transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022858	alanine transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0030054	cell junction	IEP	Predict GO terms from Neighborhoods
CC	GO:0030312	external encapsulating structure	IEP	Predict GO terms from Neighborhoods
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0032029	myosin tail binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0032328	alanine transport	IEP	Predict GO terms from Neighborhoods
CC	GO:0032420	stereocilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0033302	quercetin O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033303	quercetin O-glucoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033329	kaempferol O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033330	kaempferol O-glucoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033481	galacturonate biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0033485	cyanidin 3-O-glucoside biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0033834	kaempferol 3-O-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0035091	phosphatidylinositol binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0035315	hair cell differentiation	IEP	Predict GO terms from Neighborhoods
CC	GO:0035838	growing cell tip	IEP	Predict GO terms from Neighborhoods
BP	GO:0042490	mechanoreceptor differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042491	inner ear auditory receptor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0042882	L-arabinose transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0042900	arabinose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0043667	pollen wall	IEP	Predict GO terms from Neighborhoods
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0045298	tubulin complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0045489	pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046352	disaccharide catabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0046658	anchored component of plasma membrane	IEP	Predict GO terms from Neighborhoods
MF	GO:0047213	anthocyanidin 3-O-glucosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0047911	galacturan 1,4-alpha-galacturonidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0048016	inositol phosphate-mediated signaling	IEP	Predict GO terms from Neighborhoods
CC	GO:0048046	apoplast	IEP	Predict GO terms from Neighborhoods
BP	GO:0048358	mucilage pectin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Predict GO terms from Neighborhoods
BP	GO:0048363	mucilage pectin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0048563	post-embryonic animal organ morphogenesis	IEP	Predict GO terms from Neighborhoods
MF	GO:0050113	inositol oxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0050378	UDP-glucuronate 4-epimerase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051722	protein C-terminal methylesterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0051723	protein methylesterase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0052575	carbohydrate localization	IEP	Predict GO terms from Neighborhoods
BP	GO:0052576	carbohydrate storage	IEP	Predict GO terms from Neighborhoods
MF	GO:0052636	arabinosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052742	phosphatidylinositol kinase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0052793	pectin acetylesterase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055055	D-glucose:proton symporter activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0055056	D-glucose transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0055067	monovalent inorganic cation homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0060091	kinocilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0060113	inner ear receptor cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060118	vestibular receptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060119	inner ear receptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060122	inner ear receptor cell stereocilium organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0070161	anchoring junction	IEP	Predict GO terms from Neighborhoods
BP	GO:0070778	L-aspartate transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0071836	nectar secretion	IEP	Predict GO terms from Neighborhoods
MF	GO:0080059	flavonol 3-O-arabinosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0080115	myosin XI tail binding	IEP	Predict GO terms from Neighborhoods
CC	GO:0090404	pollen tube tip	IEP	Predict GO terms from Neighborhoods
CC	GO:0090406	pollen tube	IEP	Predict GO terms from Neighborhoods
CC	GO:0097732	9+2 non-motile cilium	IEP	Predict GO terms from Neighborhoods
BP	GO:0098655	cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0098662	inorganic cation transmembrane transport	IEP	Predict GO terms from Neighborhoods
MF	GO:0102454	cyanidin 3-O-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0102479	quercetin 3-O-beta:-D-galactosyltransferase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0120029	proton export across plasma membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:1901038	cyanidin 3-O-glucoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1904526	regulation of microtubule binding	IEP	Predict GO terms from Neighborhoods
BP	GO:1990069	stomatal opening	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR002022	Pec_lyase	130	312
IPR011050	Pectin_lyase_fold/virulence	21	392

External Links

No external refs found!

SOLTUB.AGRIA.G00000009837

Expression Profile

Co-expression Networks

Functional Annotation