SOLTUB.AGRIA.G00000009858

Description : Ubiquitin carboxyl-terminal hydrolase

Gene families : OG_02_0019061 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000009858
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_56

Type	GO Term	Name	Evidence	Source
BP	GO:0000338	protein deneddylation	IEA	AHRD
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	AHRD
MF	GO:0004857	enzyme inhibitor activity	None	Extended
MF	GO:0004866	endopeptidase inhibitor activity	IEA	AHRD
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	AHRD
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005730	nucleolus	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006325	chromatin organization	IEA	AHRD
BP	GO:0006355	regulation of DNA-templated transcription	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006515	protein quality control for misfolded or incompletely synthesized proteins	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007166	cell surface receptor signaling pathway	None	Extended
BP	GO:0007219	Notch signaling pathway	IEA	AHRD
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0008589	regulation of smoothened signaling pathway	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009895	negative regulation of catabolic process	None	Extended
BP	GO:0009966	regulation of signal transduction	None	Extended
BP	GO:0009967	positive regulation of signal transduction	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010016	shoot system morphogenesis	IEA	AHRD
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010647	positive regulation of cell communication	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016579	protein deubiquitination	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
MF	GO:0019784	deNEDDylase activity	IEA	AHRD
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0021670	lateral ventricle development	IEA	AHRD
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0023056	positive regulation of signaling	None	Extended
BP	GO:0030162	regulation of proteolysis	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030414	peptidase inhibitor activity	None	Extended
BP	GO:0030901	midbrain development	IEA	AHRD
CC	GO:0031011	Ino80 complex	IEA	AHRD
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0031329	regulation of cellular catabolic process	None	Extended
BP	GO:0031330	negative regulation of cellular catabolic process	None	Extended
BP	GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0032435	negative regulation of proteasomal ubiquitin-dependent protein catabolic process	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0035520	monoubiquitinated protein deubiquitination	IEA	AHRD
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042177	negative regulation of protein catabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0045861	negative regulation of proteolysis	None	Extended
BP	GO:0045880	positive regulation of smoothened signaling pathway	IEA	AHRD
BP	GO:0045892	negative regulation of DNA-templated transcription	IEA	AHRD
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048583	regulation of response to stimulus	None	Extended
BP	GO:0048584	positive regulation of response to stimulus	None	Extended
BP	GO:0048853	forebrain morphogenesis	IEA	AHRD
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051248	negative regulation of protein metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
MF	GO:0061134	peptidase regulator activity	None	Extended
MF	GO:0061135	endopeptidase regulator activity	None	Extended
BP	GO:0061136	regulation of proteasomal protein catabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
CC	GO:0070603	SWI/SNF superfamily-type complex	None	Extended
MF	GO:0070628	proteasome binding	IEA	AHRD
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071629	cytoplasm protein quality control by the ubiquitin-proteasome system	IEA	AHRD
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0097346	INO80-type complex	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:0140455	cytoplasm protein quality control	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901799	negative regulation of proteasomal protein catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903050	regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903051	negative regulation of proteolysis involved in protein catabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1904888	cranial skeletal system development	IEA	AHRD
CC	GO:1904949	ATPase complex	None	Extended
BP	GO:2000058	regulation of ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:2000059	negative regulation of ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000255	allantoin metabolic process	IEP	Predict GO terms from Neighborhoods
CC	GO:0001917	photoreceptor inner segment	IEP	Predict GO terms from Neighborhoods
MF	GO:0004656	procollagen-proline 4-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0004846	urate oxidase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0006144	purine nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006145	purine nucleobase catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006147	guanine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006148	inosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006149	deoxyinosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006152	purine nucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006154	adenosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006157	deoxyadenosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006161	deoxyguanosine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006195	purine nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006196	AMP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0006204	IMP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0007029	endoplasmic reticulum organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007031	peroxisome organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0007084	mitotic nuclear membrane reassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0009112	nucleobase metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009114	hypoxanthine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009115	xanthine catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009116	nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009119	ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009120	deoxyribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009123	nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009125	nucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009126	purine nucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009128	purine nucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009151	purine deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009154	purine ribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009155	purine deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009158	ribonucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009159	deoxyribonucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009161	ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009162	deoxyribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009164	nucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009166	nucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009167	purine ribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009169	purine ribonucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009170	purine deoxyribonucleoside monophosphate metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009172	purine deoxyribonucleoside monophosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009261	ribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009262	deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009264	deoxyribonucleotide catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009394	2'-deoxyribonucleotide metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0009581	detection of external stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009582	detection of abiotic stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009583	detection of light stimulus	IEP	Predict GO terms from Neighborhoods
BP	GO:0009584	detection of visible light	IEP	Predict GO terms from Neighborhoods
BP	GO:0009877	nodulation	IEP	Predict GO terms from Neighborhoods
BP	GO:0009963	positive regulation of flavonoid biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0010842	retina layer formation	IEP	Predict GO terms from Neighborhoods
BP	GO:0016553	base conversion or substitution editing	IEP	Predict GO terms from Neighborhoods
BP	GO:0016554	cytidine to uridine editing	IEP	Predict GO terms from Neighborhoods
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	Predict GO terms from Neighborhoods
MF	GO:0016663	oxidoreductase activity, acting on other nitrogenous compounds as donors, oxygen as acceptor	IEP	Predict GO terms from Neighborhoods
BP	GO:0018126	protein hydroxylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0018208	peptidyl-proline modification	IEP	Predict GO terms from Neighborhoods
BP	GO:0018401	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	IEP	Predict GO terms from Neighborhoods
BP	GO:0019511	peptidyl-proline hydroxylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0019628	urate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0019692	deoxyribose phosphate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0019798	procollagen-proline dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0031406	carboxylic acid binding	IEP	Predict GO terms from Neighborhoods
MF	GO:0031418	L-ascorbic acid binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0031426	polycistronic mRNA processing	IEP	Predict GO terms from Neighborhoods
BP	GO:0031468	nuclear membrane reassembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031539	positive regulation of anthocyanin metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0031542	positive regulation of anthocyanin biosynthetic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0031543	peptidyl-proline dioxygenase activity	IEP	Predict GO terms from Neighborhoods
MF	GO:0031545	peptidyl-proline 4-dioxygenase activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0031984	organelle subcompartment	IEP	Predict GO terms from Neighborhoods
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042278	purine nucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042453	deoxyguanosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042454	ribonucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0045048	protein insertion into ER membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0046033	AMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046037	GMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046038	GMP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046040	IMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046053	dAMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046054	dGMP metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046055	dGMP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046059	dAMP catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046085	adenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046090	deoxyadenosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046094	deoxyinosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046098	guanine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046100	hypoxanthine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046102	inosine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046110	xanthine metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046113	nucleobase catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046121	deoxyribonucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046122	purine deoxyribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046124	purine deoxyribonucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046128	purine ribonucleoside metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046130	purine ribonucleoside catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046386	deoxyribose phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0046415	urate metabolic process	IEP	Predict GO terms from Neighborhoods
MF	GO:0048029	monosaccharide binding	IEP	Predict GO terms from Neighborhoods
BP	GO:0050906	detection of stimulus involved in sensory perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0050908	detection of light stimulus involved in visual perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0050962	detection of light stimulus involved in sensory perception	IEP	Predict GO terms from Neighborhoods
BP	GO:0051205	protein insertion into membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0060059	embryonic retina morphogenesis in camera-type eye	IEP	Predict GO terms from Neighborhoods
BP	GO:0071709	membrane assembly	IEP	Predict GO terms from Neighborhoods
BP	GO:0071763	nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0071782	endoplasmic reticulum tubular network	IEP	Predict GO terms from Neighborhoods
BP	GO:0072523	purine-containing compound catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0080006	internode patterning	IEP	Predict GO terms from Neighborhoods
BP	GO:0080147	root hair cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0090227	regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0090229	negative regulation of red or far-red light signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0101024	mitotic nuclear membrane organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0140547	acquisition of seed longevity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:1901658	glycosyl compound catabolic process	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR022617	Rad60/SUMO-like_dom	339	404
IPR029071	Ubiquitin-like_domsf	336	406
IPR001578	Peptidase_C12_UCH	10	122
IPR038765	Papain-like_cys_pep_sf	10	123

External Links

No external refs found!

SOLTUB.AGRIA.G00000009858

Expression Profile

Co-expression Networks

Functional Annotation