SOLTUB.AGRIA.G00000010399

Description : Cell division cycle 20.5, cofactor of apc complex

Gene families : OG_02_0005683 (Orthogroups with 8 Potato genotypes) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR Network (HRR 50 & PCC 0.5): SOLTUB.AGRIA.G00000010399
Cluster	HCCA Clusters (HRR 50 & PCC 0.5): Cluster_13

Type	GO Term	Name	Evidence	Source
BP	GO:0000075	cell cycle checkpoint signaling	None	Extended
BP	GO:0000077	DNA damage checkpoint signaling	None	Extended
CC	GO:0000151	ubiquitin ligase complex	None	Extended
CC	GO:0000152	nuclear ubiquitin ligase complex	None	Extended
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005654	nucleoplasm	IEA	AHRD
CC	GO:0005680	anaphase-promoting complex	IEA	AHRD
CC	GO:0005813	centrosome	IEA	AHRD
CC	GO:0005815	microtubule organizing center	None	Extended
CC	GO:0005819	spindle	IEA	AHRD
CC	GO:0005829	cytosol	IEA	AHRD
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
BP	GO:0007051	spindle organization	None	Extended
BP	GO:0007052	mitotic spindle organization	None	Extended
BP	GO:0007062	sister chromatid cohesion	None	Extended
BP	GO:0007064	mitotic sister chromatid cohesion	IEA	AHRD
BP	GO:0007093	mitotic cell cycle checkpoint signaling	None	Extended
BP	GO:0007095	mitotic G2 DNA damage checkpoint signaling	IEA	AHRD
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
MF	GO:0008022	protein C-terminus binding	IEA	AHRD
MF	GO:0008047	enzyme activator activity	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	IEA	AHRD
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	IEA	AHRD
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009894	regulation of catabolic process	None	Extended
BP	GO:0009896	positive regulation of catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010646	regulation of cell communication	None	Extended
BP	GO:0010948	negative regulation of cell cycle process	None	Extended
BP	GO:0010972	negative regulation of G2/M transition of mitotic cell cycle	None	Extended
BP	GO:0010975	regulation of neuron projection development	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0019900	kinase binding	IEA	AHRD
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0023051	regulation of signaling	None	Extended
BP	GO:0030154	cell differentiation	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0030855	epithelial cell differentiation	None	Extended
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031145	anaphase-promoting complex-dependent catabolic process	IEA	AHRD
BP	GO:0031344	regulation of cell projection organization	None	Extended
BP	GO:0031396	regulation of protein ubiquitination	None	Extended
BP	GO:0031398	positive regulation of protein ubiquitination	None	Extended
BP	GO:0031399	regulation of protein modification process	None	Extended
BP	GO:0031401	positive regulation of protein modification process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	None	Extended
BP	GO:0031570	DNA integrity checkpoint signaling	None	Extended
BP	GO:0031915	positive regulation of synaptic plasticity	IEA	AHRD
CC	GO:0031965	nuclear membrane	IEA	AHRD
BP	GO:0032502	developmental process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0033044	regulation of chromosome organization	None	Extended
BP	GO:0033045	regulation of sister chromatid segregation	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
CC	GO:0033597	mitotic checkpoint complex	IEA	AHRD
BP	GO:0035556	intracellular signal transduction	None	Extended
BP	GO:0040020	regulation of meiotic nuclear division	IEA	AHRD
BP	GO:0042127	regulation of cell population proliferation	None	Extended
BP	GO:0042176	regulation of protein catabolic process	None	Extended
BP	GO:0042770	signal transduction in response to DNA damage	None	Extended
MF	GO:0042826	histone deacetylase binding	IEA	AHRD
BP	GO:0043085	positive regulation of catalytic activity	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044093	positive regulation of molecular function	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044773	mitotic DNA damage checkpoint signaling	None	Extended
BP	GO:0044774	mitotic DNA integrity checkpoint signaling	None	Extended
BP	GO:0044818	mitotic G2/M transition checkpoint	None	Extended
BP	GO:0045732	positive regulation of protein catabolic process	IEA	AHRD
BP	GO:0045786	negative regulation of cell cycle	None	Extended
BP	GO:0045787	positive regulation of cell cycle	None	Extended
BP	GO:0045930	negative regulation of mitotic cell cycle	None	Extended
BP	GO:0048167	regulation of synaptic plasticity	None	Extended
CC	GO:0048471	perinuclear region of cytoplasm	IEA	AHRD
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050773	regulation of dendrite development	IEA	AHRD
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050790	regulation of catalytic activity	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050804	modulation of chemical synaptic transmission	None	Extended
BP	GO:0050807	regulation of synapse organization	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051094	positive regulation of developmental process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051130	positive regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051225	spindle assembly	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051247	positive regulation of protein metabolic process	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051338	regulation of transferase activity	None	Extended
BP	GO:0051347	positive regulation of transferase activity	None	Extended
BP	GO:0051438	regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051443	positive regulation of ubiquitin-protein transferase activity	None	Extended
BP	GO:0051445	regulation of meiotic cell cycle	None	Extended
BP	GO:0051446	positive regulation of meiotic cell cycle	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0051726	regulation of cell cycle	None	Extended
BP	GO:0051783	regulation of nuclear division	None	Extended
BP	GO:0051983	regulation of chromosome segregation	None	Extended
MF	GO:0055106	ubiquitin-protein transferase regulator activity	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0065009	regulation of molecular function	None	Extended
BP	GO:0070306	lens fiber cell differentiation	IEA	AHRD
BP	GO:0070925	organelle assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090068	positive regulation of cell cycle process	None	Extended
BP	GO:0090128	regulation of synapse maturation	None	Extended
BP	GO:0090129	positive regulation of synapse maturation	IEA	AHRD
BP	GO:0090307	mitotic spindle assembly	IEA	AHRD
BP	GO:0090344	obsolete negative regulation of cell aging	IEA	AHRD
MF	GO:0097027	ubiquitin-protein transferase activator activity	IEA	AHRD
MF	GO:0098772	molecular function regulator activity	None	Extended
BP	GO:0099177	regulation of trans-synaptic signaling	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120035	regulation of plasma membrane bounded cell projection organization	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:0140694	non-membrane-bounded organelle assembly	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901988	negative regulation of cell cycle phase transition	None	Extended
BP	GO:1901989	positive regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1901991	negative regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1901993	regulation of meiotic cell cycle phase transition	None	Extended
BP	GO:1901995	positive regulation of meiotic cell cycle phase transition	None	Extended
BP	GO:1902099	regulation of metaphase/anaphase transition of cell cycle	None	Extended
BP	GO:1902101	positive regulation of metaphase/anaphase transition of cell cycle	None	Extended
BP	GO:1902102	regulation of metaphase/anaphase transition of meiotic cell cycle	None	Extended
BP	GO:1902104	positive regulation of metaphase/anaphase transition of meiotic cell cycle	IEA	AHRD
CC	GO:1902494	catalytic complex	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1902750	negative regulation of cell cycle G2/M phase transition	None	Extended
BP	GO:1902850	microtubule cytoskeleton organization involved in mitosis	None	Extended
BP	GO:1903047	mitotic cell cycle process	None	Extended
BP	GO:1903320	regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903322	positive regulation of protein modification by small protein conjugation or removal	None	Extended
BP	GO:1903538	regulation of meiotic cell cycle process involved in oocyte maturation	None	Extended
BP	GO:1904146	positive regulation of meiotic cell cycle process involved in oocyte maturation	IEA	AHRD
BP	GO:1904666	regulation of ubiquitin protein ligase activity	None	Extended
BP	GO:1904668	positive regulation of ubiquitin protein ligase activity	IEA	AHRD
BP	GO:1905132	regulation of meiotic chromosome separation	None	Extended
BP	GO:1905134	positive regulation of meiotic chromosome separation	None	Extended
BP	GO:1905818	regulation of chromosome separation	None	Extended
BP	GO:1905820	positive regulation of chromosome separation	None	Extended
CC	GO:1990234	transferase complex	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended
BP	GO:2000243	positive regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000349	generation of catalytic spliceosome for first transesterification step	IEP	Predict GO terms from Neighborhoods
BP	GO:0000380	alternative mRNA splicing, via spliceosome	IEP	Predict GO terms from Neighborhoods
MF	GO:0000384	first spliceosomal transesterification activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0002021	response to dietary excess	IEP	Predict GO terms from Neighborhoods
MF	GO:0005315	inorganic phosphate transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
CC	GO:0005686	U2 snRNP	IEP	Predict GO terms from Neighborhoods
CC	GO:0005816	spindle pole body	IEP	Predict GO terms from Neighborhoods
CC	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0008587	imaginal disc-derived wing margin morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0009965	leaf morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0010247	detection of phosphate ion	IEP	Predict GO terms from Neighborhoods
BP	GO:0010450	inflorescence meristem growth	IEP	Predict GO terms from Neighborhoods
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	IEP	Predict GO terms from Neighborhoods
BP	GO:0022416	chaeta development	IEP	Predict GO terms from Neighborhoods
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0030473	nuclear migration along microtubule	IEP	Predict GO terms from Neighborhoods
MF	GO:0030570	pectate lyase activity	IEP	Predict GO terms from Neighborhoods
BP	GO:0031063	regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031065	positive regulation of histone deacetylation	IEP	Predict GO terms from Neighborhoods
BP	GO:0031505	fungal-type cell wall organization	IEP	Predict GO terms from Neighborhoods
CC	GO:0033644	host cell membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0035435	phosphate ion transmembrane transport	IEP	Predict GO terms from Neighborhoods
BP	GO:0042177	negative regulation of protein catabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0042254	ribosome biogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0042461	photoreceptor cell development	IEP	Predict GO terms from Neighborhoods
BP	GO:0045444	fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0045570	regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045572	positive regulation of imaginal disc growth	IEP	Predict GO terms from Neighborhoods
BP	GO:0045747	positive regulation of Notch signaling pathway	IEP	Predict GO terms from Neighborhoods
BP	GO:0046329	negative regulation of JNK cascade	IEP	Predict GO terms from Neighborhoods
BP	GO:0048448	stamen morphogenesis	IEP	Predict GO terms from Neighborhoods
BP	GO:0048461	flower structural organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0050872	white fat cell differentiation	IEP	Predict GO terms from Neighborhoods
BP	GO:0060612	adipose tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0060613	fat pad development	IEP	Predict GO terms from Neighborhoods
BP	GO:0061448	connective tissue development	IEP	Predict GO terms from Neighborhoods
BP	GO:0070050	neuron cellular homeostasis	IEP	Predict GO terms from Neighborhoods
CC	GO:0070274	RES complex	IEP	Predict GO terms from Neighborhoods
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	Predict GO terms from Neighborhoods
BP	GO:0071852	fungal-type cell wall organization or biogenesis	IEP	Predict GO terms from Neighborhoods
CC	GO:0071920	cleavage body	IEP	Predict GO terms from Neighborhoods
CC	GO:0072686	mitotic spindle	IEP	Predict GO terms from Neighborhoods
CC	GO:0085042	periarbuscular membrane	IEP	Predict GO terms from Neighborhoods
BP	GO:0090207	regulation of triglyceride metabolic process	IEP	Predict GO terms from Neighborhoods
BP	GO:0090312	positive regulation of protein deacetylation	IEP	Predict GO terms from Neighborhoods
MF	GO:1901683	arsenate ion transmembrane transporter activity	IEP	Predict GO terms from Neighborhoods
BP	GO:1901684	arsenate ion transmembrane transport	IEP	Predict GO terms from Neighborhoods

InterPro domains	Description	Start	Stop
IPR024977	Apc4_WD40_dom	178	234
IPR036322	WD40_repeat_dom_sf	142	450
IPR001680	WD40_repeat	304	342
IPR001680	WD40_repeat	418	448
IPR001680	WD40_repeat	258	294

External Links

No external refs found!

SOLTUB.AGRIA.G00000010399

Expression Profile

Co-expression Networks

Functional Annotation